#158: usable view of LOINC lab terms
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Reporter: rwaitman | Owner: budh0007
Type: enhancement | Status: assigned
Priority: major | Milestone: data-domains3
Component: data-stds | Resolution:
Keywords: | Blocked By:
Blocking: 68 |
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Comment (by schandaka):
Belay reached out to Supreet and Justin regarding UMN's LOINC hierarchy on
Babel. Supreet shared their code. Justin gave me the permission to share
UMN's code [attachment: Update LOINC Ontology.sql] in this ticket.Here is
Supreet's response to Belay.
{{{
Hi Belay,
The LOINC hierarchy at our site was constructed from the National Library
of Medicine ( UMLS).
Some key points related to the lab hierarchy:
- All the parent levels from MRCONSO where SAB= LNC (LOINC) and TTY =LPN
(LOINC Parts Name) were joined to MRHIER.
- In the MRHIER file the LOINC codes for the leaf nodes i.e. the CXN (The
context number if the atom has multiple contexts) was filtered on 2.
- For the LOINC parent folders the CXN was filtered on 1. It also has a
starting AUI path of A6321000.A13333582
Please see attached the code and also cc'ing Tim Meyer from our team in
case of questions related to the code.
Let me know if you need anything else.
Thanks,
Supreet
}}}
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:15>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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