#711: External Validation for Acute Kidney Injury(AKI) Predictive Models using
PCORnet CDM data
--------------------------+--------------------
Reporter: meiliu | Owner: xsong
Type: task | Status: new
Priority: major | Milestone:
Component: data-sharing | Resolution:
Keywords: aki cdm | Blocked By:
Blocking: |
--------------------------+--------------------
Comment (by xsong):
Awesome, we are so close!
**Debugging**: Just based on the error, it seems that the collected
medication table is likely to be empty. To be sure about it, would you
please help me refresh the package and run a new script
`./test/debug_collect_med.R` and report the summaries generated in the
**console**, which will be something like
{{{
9479020 rows are collected.
145345 distinct encounters are covered.
11539 distinct rxnorm are identified.
exposure quantiles are 1,1,1,1,1,1,2,3,5,8,771 .
}}}
This stats can help me better identify the problem.
Replying to [comment:22 lv]:
> That helped! Now we're getting the following:
>
> Quitting from lines 780-889 (AKI_CDM_EXT_VALID_p1_QA.Rmd)
>
> Error in mutate_impl(.data, dots) :
> Column `expos_daily` must be length 0 (the number of rows) or one, not
2
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:23>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
_______________________________________________
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev
