Thank you very much Justin Sir.
On Fri, May 6, 2016 at 4:25 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 5/6/16 3:32 AM, Rishikesh Parulekar wrote: > >> Hi, >> >> I have completed simulation for 10ns and while analysing the trajectories >> through UCSF chimera i encountered that for some time my protein structure >> is getting distorted (pulled to other side from original confromation). >> Because of this I am getting fluctuated RMSD. My input parameters for >> md.mdp are same as mentioned in the bevan lab tutorial. What could be the >> possible reason ?? >> >> > With Google you would have gotten an answer in seconds, rather than > hours... > > > http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Ruth L. Kirschstein NRSA Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 629 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > jalem...@outerbanks.umaryland.edu | (410) 706-7441 > http://mackerell.umaryland.edu/~jalemkul > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.