yes I have removed water & the pdb file only contains protein On Sat, May 14, 2016 at 1:50 PM, Chalaoux, Francois-Regis < francois-regis.chala...@evotec.com> wrote:
> Hi, > > Did you removed Water ? > Check also there is no other protein in the same file. > > FR. > > > Le 14 mai 2016 à 07:04:15, Upasana Ray <upasanaray...@gmail.com> a > écrit : > > > > Dear user, > > > > I have generated my final protein.pdb file by using trjconv command from > > .xtc file. The size of my pdb file is 0.98 GB, so whenever I am opening > it > > for docking purpose my computer is freezing. Now how can I reduce my pdb > > file size from GB to MB for using it properly. please help me to deal > > with this problem. > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.