Hi Upasana, What is your goal, your research objective? 'opening it for docking purpose' is way too vague for us to help you, other then suggesting that you are probably not choosing an optimal approach.
Cheers, Tsjerk On May 14, 2016 07:04, "Upasana Ray" <[email protected]> wrote: > Dear user, > > I have generated my final protein.pdb file by using trjconv command from > .xtc file. The size of my pdb file is 0.98 GB, so whenever I am opening it > for docking purpose my computer is freezing. Now how can I reduce my pdb > file size from GB to MB for using it properly. please help me to deal > with this problem. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
