My name is Odame and I am currently working on a project that requires molecular dynamics. I plan using GROMACS for my simulations. Specifically I would like to simulate a membrane protein in POPC, TFE, DPC and DHPC lipid layers.
First, how do I build or obtain these lipid bilayers. Is there a software or online resource I can go to obtain them or gromacs package provides these lipids? Initially i tried a POPC simulation in GROMACS and was getting errors in topology outputs. I was therefore unable to continue to the next steps .Is there a tutorial specifically for simulating in these -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
