Hi, There's numerous online resources that e.g. "membrane simulation in gromacs" will let you search for. Those describe lots of alternative tools that are suited for different force fields, membrane compositions, simulation software... Do explore some of them and if you have follow-up questions suited for GROMACS, please ask those here.
Mark On Wed, Aug 16, 2017 at 6:20 PM Odame Agyapong <[email protected]> wrote: > My name is Odame and I am currently working on a project that requires > molecular dynamics. I plan using GROMACS for my simulations. > Specifically I would like to simulate a membrane protein in POPC, TFE, > DPC and DHPC lipid layers. > > First, how do I build or obtain these lipid bilayers. Is there a > software or online resource I can go to obtain them or gromacs package > provides these lipids? > > Initially i tried a POPC simulation in GROMACS and was getting errors > in topology outputs. I was therefore unable to continue to the next > steps .Is there a tutorial specifically for simulating in these > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
