Hi, All the membrane builder packages / websites support multiple lipids because that's an obvious useful feature. Which package you want to use depends on all the other aspects, so nobody can say "do it *this way*"
Mark On Thu, Aug 17, 2017 at 11:15 AM Odame Agyapong <[email protected]> wrote: > Yes found some online resources but mostly for POPC. where do I get that > for other lipids > > On Thursday, August 17, 2017, Mark Abraham <[email protected]> > wrote: > > Hi, > > > > There's numerous online resources that e.g. "membrane simulation in > > gromacs" will let you search for. Those describe lots of alternative > tools > > that are suited for different force fields, membrane compositions, > > simulation software... Do explore some of them and if you have follow-up > > questions suited for GROMACS, please ask those here. > > > > Mark > > > > On Wed, Aug 16, 2017 at 6:20 PM Odame Agyapong <[email protected]> > wrote: > > > >> My name is Odame and I am currently working on a project that requires > >> molecular dynamics. I plan using GROMACS for my simulations. > >> Specifically I would like to simulate a membrane protein in POPC, TFE, > >> DPC and DHPC lipid layers. > >> > >> First, how do I build or obtain these lipid bilayers. Is there a > >> software or online resource I can go to obtain them or gromacs package > >> provides these lipids? > >> > >> Initially i tried a POPC simulation in GROMACS and was getting errors > >> in topology outputs. I was therefore unable to continue to the next > >> steps .Is there a tutorial specifically for simulating in these > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to [email protected]. > >> > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
