rekado pushed a commit to branch master
in repository guix.
commit f98837a6baca957098d073d5bb8d440ddf9ffefb
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Jun 5 00:33:00 2021 +0200
gnu: pigx-rnaseq: Update to 0.0.13.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
---
gnu/packages/bioinformatics.scm | 12 +++++-------
1 file changed, 5 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c1cfabc..dab0973 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10355,7 +10355,7 @@ once. This package provides tools to perform Drop-seq
analyses.")
(define-public pigx-rnaseq
(package
(name "pigx-rnaseq")
- (version "0.0.10")
+ (version "0.0.13")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/BIMSBbioinfo/pigx_rnaseq/";
@@ -10363,7 +10363,7 @@ once. This package provides tools to perform Drop-seq
analyses.")
"/pigx_rnaseq-" version ".tar.gz"))
(sha256
(base32
- "0z3hr120wk2vrlmlpz1vp3n9wy3rq4y2mnzh2vf08qgqn2xfdwcw"))))
+ "0z9zid2c8q16lfzlnjd63nparknhv31qgv4h79algmvhkakm2pgk"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-tests? #f ; not supported
@@ -10373,19 +10373,17 @@ once. This package provides tools to perform
Drop-seq analyses.")
(add-after 'unpack 'disable-resource-intensive-test
(lambda _
(substitute* "Makefile.in"
- (("(^ tests/test_trim_galore/test.sh).*" _ m) m)
(("^ tests/test_multiqc/test.sh") "")
- (("^ test.sh") ""))
- #t)))))
+ (("^ test.sh") "")))))))
(inputs
`(("coreutils" ,coreutils)
("sed" ,sed)
("gzip" ,gzip)
("snakemake" ,snakemake)
- ("fastqc" ,fastqc)
("multiqc" ,multiqc)
("star" ,star-for-pigx)
- ("trim-galore" ,trim-galore)
+ ("hisat2" ,hisat2)
+ ("fastp" ,fastp)
("htseq" ,htseq)
("samtools" ,samtools)
("r-minimal" ,r-minimal)
