rekado pushed a commit to branch master
in repository guix.
commit ddfe68ebbe502508381af844031a44dc0a022c60
Author: Navid Afkhami <[email protected]>
AuthorDate: Fri Jan 20 09:57:59 2023 +0100
gnu: Add r-doubletcollection.
* gnu/packages/bioinformatics.scm (r-doubletcollection): New variable.
Signed-off-by: Ricardo Wurmus <[email protected]>
---
gnu/packages/bioinformatics.scm | 43 ++++++++++++++++++++++++++++++++++++++++-
1 file changed, 42 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d9c39fbb34..bac094b1a5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23,7 +23,7 @@
;;; Copyright © 2021 Hong Li <[email protected]>
;;; Copyright © 2021, 2022, 2023 Simon Tournier <[email protected]>
;;; Copyright © 2021 Felix Gruber <[email protected]>
-;;; Copyright © 2022 Navid Afkhami <[email protected]>
+;;; Copyright © 2022, 2023 Navid Afkhami <[email protected]>
;;; Copyright © 2022 Antero Mejr <[email protected]>
;;;
;;; This file is part of GNU Guix.
@@ -7986,6 +7986,47 @@ tasks.")
Pore-C concatemers.")
(license license:gpl3))))
+(define-public r-doubletcollection
+ (let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd")
+ (revision "1"))
+ (package
+ (name "r-doubletcollection")
+ (version (git-version "1.1.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/xnnba1984/DoubletCollection";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v"))))
+ (properties `((upstream-name . "DoubletCollection")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics
+ r-doubletfinder
+ r-gam
+ r-ggplot2
+ r-ggthemes
+ r-mast
+ r-mclust
+ r-prroc
+ r-reticulate
+ r-scales
+ r-scdblfinder
+ r-scds
+ r-seurat
+ r-singlecellexperiment
+ r-slingshot
+ r-summarizedexperiment))
+ (home-page "https://github.com/xnnba1984/DoubletCollection";)
+ (synopsis "Tool for finding doublets in scRNA-seq data")
+ (description
+ "This is an R package that integrates the installation of
+doublet-detection methods. In addition, this tool is used for execution and
+benchmark of those eight mentioned methods.")
+ (license license:gpl3+))))
+
(define-public r-pando
(package
(name "r-pando")
