rekado pushed a commit to branch master
in repository guix.
commit 072f605c125f98bf69cf25ec5a6caf791c72920b
Author: Navid Afkhami <[email protected]>
AuthorDate: Fri Jan 20 09:58:00 2023 +0100
gnu: Add r-scds.
* gnu/packages/bioconductor.scm (r-scds): New variable.
Signed-off-by: Ricardo Wurmus <[email protected]>
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f1760b2007..6f2c7380fb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12,6 +12,7 @@
;;; Copyright © 2021 Hong Li <[email protected]>
;;; Copyright © 2021 Tim Howes <[email protected]>
;;; Copyright © 2021 Nicolas Vallet <[email protected]>
+;;; Copyright © 2023 Navid Afkhami <[email protected]>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -7782,6 +7783,34 @@ includes a function to create a cluster-level minimum
spanning tree and data
structures to hold pseudotime inference results.")
(license license:gpl3)))
+(define-public r-scds
+ (package
+ (name "r-scds")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scds" version))
+ (sha256
+ (base32
+ "0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd"))))
+ (properties `((upstream-name . "scds")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-dplyr
+ r-matrix
+ r-proc
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-xgboost))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/scds";)
+ (synopsis "In-silico doublet annotation for single cell RNA sequencing
data")
+ (description
+ "This is an R package for doublet annotation of single cell RNA
+sequencing data. @code{scds} provides methods to annotate doublets in
+scRNA-seq data computationally.")
+ (license license:expat)))
+
(define-public r-slingshot
(package
(name "r-slingshot")
