rekado pushed a commit to branch core-updates
in repository guix.
commit b8a0a10308458dbbb76ad68cf48c3580cf82eb94
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Mon Apr 24 18:51:46 2023 +0200
gnu: Add htscodecs.
* gnu/packages/bioinformatics.scm (htscodecs): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 68c1406fc3..75e229a88a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5629,6 +5629,32 @@ FastQ files. This tool has multi-threading support to
afford high
performance.")
(license license:expat)))
+(define-public htscodecs
+ (package
+ (name "htscodecs")
+ (version "1.5.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/samtools/htscodecs/";
+ "releases/download/v"
+ version "/htscodecs-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1cys6hp438m1rfmgq6xig3q0md7nh0m03jb17mc798q13lsggpil"))))
+ (build-system gnu-build-system)
+ (inputs (list bzip2 zlib))
+ (home-page "https://github.com/samtools/htscodecs";)
+ (synopsis "Custom compression for CRAM and others")
+ (description
+ "This package implements the custom CRAM codecs used for \"EXTERNAL\"
+block types. These consist of two variants of the rANS codec (8-bit and
+16-bit renormalisation, with run-length encoding and bit-packing also
+supported in the latter), a dynamic arithmetic coder, and custom codecs for
+name/ID compression and quality score compression derived from fqzcomp.")
+ (license
+ (list license:public-domain ;c_range_coder.h, rANS_byte.h, and rANS_word.h
+ license:bsd-3)))) ;all the rest
+
(define-public htslib
(package
(name "htslib")
