rekado pushed a commit to branch core-updates
in repository guix.
commit 913668e8796f453630c83b7e20df72e60961ad11
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Mon Apr 24 18:52:08 2023 +0200
gnu: salmon: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (salmon): Update to 1.10.1.
[inputs]: Replace cereal-1.3.0 with cereal; add htscodecs.
[native-inputs]: Update hash of pufferfish sources.
---
gnu/packages/bioinformatics.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 75e229a88a..f54b1db86c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12020,7 +12020,7 @@ The following file formats are supported:
(define-public salmon
(package
(name "salmon")
- (version "1.9.0")
+ (version "1.10.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -12029,7 +12029,7 @@ The following file formats are supported:
(file-name (git-file-name name version))
(sha256
(base32
- "1370ry3jpj05gplzyny44mqg77a29a6gp8ijmjz135d2igf956r8"))
+ "0grpcajxf2bch4b74zb66pdssda8yc7jvxj5ckaw0xvw1605rpcj"))
(modules '((guix build utils)))
(snippet
;; Delete bundled headers for eigen3.
@@ -12124,9 +12124,10 @@ The following file formats are supported:
(inputs
(list boost
bzip2
- cereal-1.3.0
+ cereal
curl
eigen
+ htscodecs
jemalloc
libgff
tbb
@@ -12143,7 +12144,7 @@ The following file formats are supported:
(file-name (git-file-name "pufferfish" version))
(sha256
(base32
-
"048a006mc2d0h78ym58mv67hl1pj480ilc5ifq0rlzfdyyfs1b8i"))))))
+
"0fcv5rd2k4fabsg489sjfxgjisivhwk1w26gfc88rgpszdkcla36"))))))
(home-page "https://github.com/COMBINE-lab/salmon";)
(synopsis "Quantification from RNA-seq reads using lightweight alignments")
(description "Salmon is a program to produce highly-accurate,
