rekado pushed a change to branch master
in repository guix.
from d6c95d4208 gnu: Revmoe go-github-com-syndtr-goleveldb.
add 749cb3c520 gnu: Add python-dask-image.
add 536228e65e gnu: python-pooch: Update to 1.8.1.
add 061885faec gnu: python-xarray-datatree: Add missing input.
add c9d9b9572b gnu: Add python-xarray-schema.
add 82f83cafb9 gnu: Add rust-lapack-sys-0.14.
add 95478222c0 gnu: Add rust-lapack-0.19.
add aed5e5965f gnu: Add rust-blas-sys-0.7.
add 6f71c4ab01 gnu: Add rust-blas-0.22.
add 5f186e2f79 gnu: Add python-pyct.
add 859953f60a gnu: Add python-nbmake.
add 407fcd510b gnu: Add python-colorcet.
add 83262c971e gnu: Add python-multiscale-spatial-image.
add d1eda517f3 gnu: Add python-param.
add 94ea83d9ef gnu: Add rust-amd-0.2.
add c4eccd2066 gnu: Add python-clarabel.
add 670dcc8e4c gnu: Add python-fastcluster.
add d470a9aa54 gnu: Add python-scs.
add d051ef0913 gnu: Add python-qdldl.
add a0971243bc gnu: Add python-osqp.
add 2c0cf38f04 gnu: Add python-ecos.
add da18b8620f gnu: Add python-cvxpy.
add 854c42e30c gnu: Add python-metacells.
add da4006d474 gnu: python-plastid: Replace nose with pytest.
add d85a19a29c gnu: python-scikit-opt: Add missing input.
add 74dd2def7f gnu: python-pandas: Default to version 2.x.
add 297e88edff gnu: python-xarray: Disable tests that are known to fail.
add 8f8cee9ed9 gnu: r-reticulate: Update to 1.36.1.
add 5def84031f gnu: tadbit: Use G-expression.
add 6962b32a2b gnu: python-pyjanitor: Update to 0.27.0.
add 6be3c24d82 gnu: python-cython-3: Update to 3.0.8.
add b343aef5aa gnu: python-scikit-learn: Update to 1.4.2.
add 5e7da50260 gnu: python-pandas-2: Fix version.
add 9953207f3e gnu: python-tabulate: Update to 0.9.0.
add adf54dea4e gnu: python-pandas-stub: Update to 2.1.1.230928.
add 442eba98be gnu: Add apache-orc.
add 8647aaaa14 gnu: apache-arrow: Build with ORC.
add dd6f87e492 gnu: python-pyarrow: Build with ORC support.
add fef6edecbc gnu: python-tables: Update to 3.7.0.
add dff3357bb6 gnu: python-dask: Update to 2024.4.2.
add cc67370ca1 gnu: python-partd: Update to 1.4.1.
add f3a80df770 gnu: Add python-dask-expr.
add 07c7b342bb gnu: python-distributed: Update to 2024.4.2.
add d4c62ff301 gnu: Add python-scikit-build-core.
add fe780b55b4 gnu: Add python-awkward-cpp.
add a3ff747a48 gnu: Add python-awkward.
add eb866b3699 gnu: Add python-array-api-compat.
add 24bf2329a4 gnu: python-anndata: Update to 0.10.7.
add e9d70b85eb gnu: python-biom-format: Untangle from python-scikit-bio.
add 53b2fe2973 gnu: python-scikit-bio: Update to 0.6.0.
add 92259a5d4b gnu: python-pandas-stubs: Update tests.
add 2a7e513803 gnu: python-tabulate: Enable tests and fix version string.
add 5450886934 gnu: python-numpy: Update to 1.26.0.
add 1295abd0af Revert "gnu: python-numpy: Update to 1.26.0."
add 22eeb8f16e gnu: python-dask: Disable all tokenize tests.
add 3c0579849c gnu: python-pandas-stubs: Accept numpy 1.23.
add ba92122e53 gnu: python-umap-learn: Update to 0.5.6.
add a237ba5378 gnu: python-umap-learn: Disable failing test.
add 78d5fb1720 gnu: python-dask: Propagate python-dask-expr.
add 262df6c607 gnu: python-dask: Disable some tests.
add 57f265f1ea gnu: python-dask: Do not reference pyarrow_hotfix.
add 332a8fa4bc gnu: python-cooler: Update to 0.9.3.
add 453b7a267b gnu: tadbit: Update to 1.0.1-2.2838129.
add 93a397f8b7 gnu: tadbit: Patch for compatibility with latest scipy.
add 2d8c81a8d7 gnu: tadbit: Add R to inputs.
add d5424b12af gnu: python-imbalanced-learn: Update to 0.12.2.
add ee9720b2f0 gnu: python-jsonpickle: Update to 3.0.4.
add 6244177e79 gnu: snakemake-6: Make compatible with tabulate 0.9.0.
add 6095e5b436 gnu: snakemake-7: Make compatible with tabulate 0.9.0.
add 36a1e76173 gnu: snakemake: Fetch from git repository.
add 8d14b1cbb6 gnu: snakemake-5: Make compatible with tabulate 0.9.0.
add 9692e2bb7c gnu: snakemake-5: Patch version string.
add 31f57ae7df gnu: python-hicexplorer: Update to 3.7.4.
add 714baf2295 gnu: python-termcolor: Update to 2.4.0.
add 360f9ea421 gnu: python-cleanlab: Update to 2.6.3.
add 79d13482e4 gnu: python-pytest-shutil: Disable a test.
add 1f5eef8391 gnu: Add python-termcolor-1.
add 7c938c232c gnu: barectf: Use python-termcolor-1.
add 0e24635033 gnu: python-omnipath: Update to 1.0.8.
add cb9ec4c5c5 gnu: python-decoupler-py: Update to 1.6.0.
add ffffc0227a gnu: python-statmake: Adjust tests and version checks.
add 317be75d1d gnu: python-verde: Add missing input.
add d14d5147b1 gnu: python-bioframe: Update to 0.6.4.
add 1ea0e3e6dd gnu: python-cooltools: Update to 0.7.0.
add c226d12856 gnu: python-scikit-learn-extra: Disable a validation test.
add f678884b4a gnu: python-mapie: Disable strict tests.
add 02ca781c03 gnu: python-plotnine: Disable test because of harmless
warning.
add 4d65083bf8 gnu: python-plotnine: Fix version string.
add 99bf1b1002 gnu: python-liana-py: Update to 1.1.0.
add 041ea43a86 gnu: python-pingouin: Update to 0.5.4.
add 9d615b915b gnu: python-paramz: Update to 0.9.6.
add a4039b6994 gnu: python-pygsp: Add missing input.
add 1b44a23503 gnu: python-gpy: Update to 1.13.1.
add a4ad0a46ef gnu: python-graphtools: Fix tests.
No new revisions were added by this update.
Summary of changes:
gnu/local.mk | 2 +-
gnu/packages/bioinformatics.scm | 403 ++++++++++------
gnu/packages/cran.scm | 4 +-
gnu/packages/crates-io.scm | 111 ++++-
gnu/packages/databases.scm | 209 ++++++---
gnu/packages/fontutils.scm | 7 +-
gnu/packages/geo.scm | 2 +-
gnu/packages/graph.scm | 13 +-
gnu/packages/instrumentation.scm | 2 +-
gnu/packages/machine-learning.scm | 78 +--
gnu/packages/patches/python-clarabel-blas.patch | 38 ++
gnu/packages/patches/python-scikit-bio-1887.patch | 109 -----
gnu/packages/python-check.scm | 47 +-
gnu/packages/python-science.scm | 547 +++++++++++++++++++---
gnu/packages/python-web.scm | 58 ++-
gnu/packages/python-xyz.scm | 505 ++++++++++++++++++--
gnu/packages/statistics.scm | 6 +
17 files changed, 1637 insertions(+), 504 deletions(-)
create mode 100644 gnu/packages/patches/python-clarabel-blas.patch
delete mode 100644 gnu/packages/patches/python-scikit-bio-1887.patch
