guix_mirror_bot pushed a commit to branch master
in repository guix.
commit f77ecfbbb1565a27b9a9c8b7d4a32e9154fe343e
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Jul 4 00:37:26 2025 +0100
gnu: Add python-cobaya.
* gnu/packages/astronomy.scm (python-cobaya): New variable.
Change-Id: Ifc6beae520bc63fe0935d07461bf28222038c998
---
gnu/packages/astronomy.scm | 60 ++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 60 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6cc4359add..97022c27af 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3104,6 +3104,66 @@ monochromatic sequential colormaps like @code{blue},
@code{green}, and
@code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).")
(license license:bsd-3)))
+(define-public python-cobaya
+ (package
+ (name "python-cobaya")
+ (version "3.5.7")
+ (source
+ (origin
+ (method git-fetch) ;no tests in pypi release
+ (uri (git-reference
+ (url "https://github.com/CobayaSampler/cobaya";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "17ccka051lknv05dlr1wfb2ha2qj27av2q2s6ir2vrcgx5c2szfp"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; Test options were taken from GitHub action workflow.
+ #~(list "--no-flaky-report"
+ "--numprocesses" (number->string (parallel-job-count))
+ "--skip-not-installed"
+ "-k" "not test_planck_NPIPE_p_CamSpec_camb_install and not
test_grid"
+ "tests")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda _
+ (setenv "HOME" "/tmp")
+ (setenv "COBAYA_PACKAGES_PATH" "/tmp"))))))
+ (native-inputs
+ (list python-flaky
+ python-pytest
+ python-pytest-xdist
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-dill
+ python-fuzzywuzzy
+ python-getdist
+ python-numpy
+ python-packaging
+ python-pandas
+ python-portalocker
+ python-py-bobyqa
+ python-pyyaml
+ python-scipy
+ python-tqdm
+ python-typing-extensions))
+ (home-page "https://github.com/CobayaSampler/cobaya";)
+ (synopsis "Code for Bayesian analysis in Cosmology")
+ (description
+ "@acronym{Cobaya, COde for BAYesian Analysis}, and Spanish for Guinea
+Pig) is a framework for sampling and statistical modelling: it allows you to
+explore an arbitrary prior or posterior using a range of Monte Carlo
+samplers (including the advanced MCMC sampler from CosmoMC, and the advanced
+nested sampler PolyChord). The results of the sampling can be analysed with
+GetDist. It supports MPI parallelization (and very soon HPC containerization
+with Docker/Shifter and Singularity).")
+ (license license:lgpl3+)))
+
(define-public python-colossus
;; There is no source distribution in PyPI and no version tags, use the
;; commit pointing to the version 1.3.8.
