guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 1bf145eee314d9ca6c1908cf22687edb8a517553
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Nov 6 13:35:15 2025 +0000
gnu: r-duckdb: Move to duckdb.
* gnu/packages/cran.scm (r-duckdb): Move from here ...
* gnu/packages/duckdb.scm: ... to here.
Change-Id: Ic735854106fd0b0e693105183b7408d447de882c
---
gnu/packages/cran.scm | 48 +-------------------------------------------
gnu/packages/duckdb.scm | 53 ++++++++++++++++++++++++++++++++++++++++++++++++-
2 files changed, 53 insertions(+), 48 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1fd9a4131e..c861fe6ac8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -78,6 +78,7 @@
#:use-module (gnu packages crypto)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
+ #:use-module (gnu packages duckdb)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages fribidi)
#:use-module (gnu packages gawk)
@@ -41891,53 +41892,6 @@ floating point chromosomes.")
forest) is fit on the kernel matrix of a subset of the training data.")
(license license:gpl2+)))
-(define-public r-duckdb
- (package
- (name "r-duckdb")
- (version "1.2.2")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "duckdb" version))
- (sha256
- (base32 "161zxianyssvsrd2345v4bi1m2z7wj614z8343jb73vhlk6s9yyi"))
- ;; This package bundles the duckdb sources and builds a custom variant
- ;; of duckdb. I'd be happy to link it with our duckdb library instead,
- ;; but it does not seem possible to do that.
- #;
- (snippet
- '(delete-file "src/duckdb.tar.xz"))))
- (properties
- '((upstream-name . "duckdb")
- (updater-extra-native-inputs . ("tzdata-for-tests"))
- ;; We don't seem to need this and I don't want to package it now.
- (updater-ignored-native-inputs . ("r-dblog"))))
- (build-system r-build-system)
- (arguments (list #:tests? #false)) ;tests can time out on the build farm
- (propagated-inputs (list r-dbi))
- (native-inputs (list r-adbcdrivermanager
- r-arrow
- r-bit64
- r-callr
- r-clock
- r-dbitest
- r-dbplyr
- r-dplyr
- r-remotes
- r-rlang
- r-testthat
- r-tibble
- r-vctrs
- r-withr
- tzdata-for-tests))
- (home-page "https://r.duckdb.org/";)
- (synopsis "DBI package for the DuckDB database management system")
- (description
- "The DuckDB project is an embedded analytical data management system with
-support for the Structured Query Language (SQL). This package includes all of
-DuckDB and an R Database Interface (DBI) connector.")
- (license license:expat)))
-
(define-public r-dummies
(package
(name "r-dummies")
diff --git a/gnu/packages/duckdb.scm b/gnu/packages/duckdb.scm
index de7c4e160e..872f927c2e 100644
--- a/gnu/packages/duckdb.scm
+++ b/gnu/packages/duckdb.scm
@@ -26,16 +26,20 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system pyproject)
#:use-module ((guix build-system python) #:select (pypi-uri))
+ #:use-module (guix build-system r)
#:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (gnu packages)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages cran)
#:use-module (gnu packages databases)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-science)
- #:use-module (gnu packages python-xyz))
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages statistics))
;;; Commentary:
;;;
@@ -141,6 +145,53 @@ single-file databases with support for secondary indexes.")
system.")
(license license:expat)))
+(define-public r-duckdb
+ (package
+ (name "r-duckdb")
+ (version "1.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "duckdb" version))
+ (sha256
+ (base32 "161zxianyssvsrd2345v4bi1m2z7wj614z8343jb73vhlk6s9yyi"))
+ ;; This package bundles the duckdb sources and builds a custom variant
+ ;; of duckdb. I'd be happy to link it with our duckdb library instead,
+ ;; but it does not seem possible to do that.
+ #;
+ (snippet
+ '(delete-file "src/duckdb.tar.xz"))))
+ (properties
+ '((upstream-name . "duckdb")
+ (updater-extra-native-inputs . ("tzdata-for-tests"))
+ ;; We don't seem to need this and I don't want to package it now.
+ (updater-ignored-native-inputs . ("r-dblog"))))
+ (build-system r-build-system)
+ (arguments (list #:tests? #false)) ;tests can time out on the build farm
+ (propagated-inputs (list r-dbi))
+ (native-inputs (list r-adbcdrivermanager
+ r-arrow
+ r-bit64
+ r-callr
+ r-clock
+ r-dbitest
+ r-dbplyr
+ r-dplyr
+ r-remotes
+ r-rlang
+ r-testthat
+ r-tibble
+ r-vctrs
+ r-withr
+ tzdata-for-tests))
+ (home-page "https://r.duckdb.org/";)
+ (synopsis "DBI package for the DuckDB database management system")
+ (description
+ "The DuckDB project is an embedded analytical data management system with
+support for the Structured Query Language (SQL). This package includes all of
+DuckDB and an R Database Interface (DBI) connector.")
+ (license license:expat)))
+
;;;
;;; Avoid adding new packages to the end of this file. To reduce the chances
;;; of a merge conflict, place them above in alphabetic order.
