guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 629df7b1e453e8872b6e42465f6c3a32aa348914
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Nov 6 13:01:21 2025 +0000
gnu: python-duckdb: Move to duckdb.
* gnu/packages/python-xyz.scm (python-duckdb): Move from here ...
* gnu/packages/duckdb.scm: ... to here.
* gnu/packages/python-science.scm: Add (gnu packages duckdb).
Change-Id: Ic8551cdd64f718e62a12576fbc1a38bf861d1644
---
gnu/packages/duckdb.scm | 76 ++++++++++++++++++++++++++++++++++++++---
gnu/packages/python-science.scm | 1 +
gnu/packages/python-xyz.scm | 62 +--------------------------------
3 files changed, 74 insertions(+), 65 deletions(-)
diff --git a/gnu/packages/duckdb.scm b/gnu/packages/duckdb.scm
index 222c53419b..de7c4e160e 100644
--- a/gnu/packages/duckdb.scm
+++ b/gnu/packages/duckdb.scm
@@ -1,10 +1,10 @@
;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2023, 2024 Greg Hogan <[email protected]>
+;;; Copyright © 2023, 2025 Ricardo Wurmus <[email protected]>
;;; Copyright © 2024 Felix Gruber <[email protected]>
-;;; Copyright © 2024 Greg Hogan <[email protected]>
;;; Copyright © 2024 Nicolas Graves <[email protected]>
;;; Copyright © 2024, 2025 Ekaitz Zarraga <[email protected]>
-;;; Copyright © 2025 Ricardo Wurmus <[email protected]>
-;;; Copyright © 2025 Sharlatan Hellseher <[email protected]>
+;;; Copyright © 2024, 2025 Sharlatan Hellseher <[email protected]>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -24,11 +24,18 @@
(define-module (gnu packages duckdb)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system cmake)
+ #:use-module (guix build-system pyproject)
+ #:use-module ((guix build-system python) #:select (pypi-uri))
+ #:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (guix utils)
- #:use-module (gnu packages))
+ #:use-module (gnu packages)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages python-build)
+ #:use-module (gnu packages python-science)
+ #:use-module (gnu packages python-xyz))
;;; Commentary:
;;;
@@ -73,6 +80,67 @@ Multi-Version Concurrency Control}. Data can be stored in
persistent,
single-file databases with support for secondary indexes.")
(license license:expat)))
+;; XXX: Try to inherit from duckdb and build from source with all extensions.
+(define-public python-duckdb
+ (package
+ (name "python-duckdb")
+ (version "1.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "duckdb" version))
+ (sha256
+ (base32 "1x8zb47y8lzc4w0g013sim8x9vd1h96ra3dd0bvh91y73f5dyn66"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:tests? #f ;FIXME: See <https://codeberg.org/guix/guix/issues/1436>.
+ #:test-flags
+ #~(list "--ignore=tests/slow/test_h2oai_arrow.py"
+ ;; Do not relay on mypy.
+ "--ignore=tests/stubs/test_stubs.py"
+ "-k" (string-append
+ ;; Don't install anything, thank you.
+ "not test_install_non_existent_extension"
+ ;; _pybind11_conduit_v1_ not found.
+ " and not test_wrap_coverage"
+ ;; See <https://github.com/duckdb/duckdb/issues/11961>.
+ " and not test_fetchmany"
+ ;; See <https://github.com/duckdb/duckdb/issues/10702>.
+ " and not test_connection_interrupt"
+ " and not test_query_interruption"))
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; Tests need this
+ (add-before 'check 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp")))
+ ;; Later versions of pybind replace "_" with "const_name".
+ (add-after 'unpack 'pybind-compatibility
+ (lambda _
+ (with-directory-excursion "src/include/duckdb_python"
+ (substitute* '("python_objects.hpp"
+ "pyfilesystem.hpp"
+ "pybind11/conversions/pyconnection_default.hpp")
+ (("const_name") "_"))))))))
+ (propagated-inputs
+ (list python-adbc-driver-manager))
+ (native-inputs
+ (list pybind11
+ python-fsspec
+ ;; python-google-cloud-storage ;python-grpcio fails (see:
guix/guix#1436)
+ python-numpy
+ python-pandas
+ python-psutil
+ ;; python-pytest
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
+ (home-page "https://www.duckdb.org";)
+ (synopsis "DuckDB embedded database")
+ (description "DuckDB is an in-process SQL OLAP database management
+system.")
+ (license license:expat)))
+
;;;
;;; Avoid adding new packages to the end of this file. To reduce the chances
;;; of a merge conflict, place them above in alphabetic order.
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 2c4f5fa892..f8d78f61cc 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -70,6 +70,7 @@
#:use-module (gnu packages crypto)
#:use-module (gnu packages databases)
#:use-module (gnu packages digest)
+ #:use-module (gnu packages duckdb)
#:use-module (gnu packages gcc)
#:use-module (gnu packages geo)
#:use-module (gnu packages graphviz)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 198535bc0a..0720018c92 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -217,6 +217,7 @@
#:use-module (gnu packages django)
#:use-module (gnu packages djvu)
#:use-module (gnu packages documentation)
+ #:use-module (gnu packages duckdb)
#:use-module (gnu packages elf)
#:use-module (gnu packages emulators)
#:use-module (gnu packages enchant)
@@ -23776,67 +23777,6 @@ runtime (rather than during a preprocessing step).")
Mustache templating language renderer.")
(license license:expat)))
-;; XXX: Try to inherit from duckdb and build from source with all extensions.
-(define-public python-duckdb
- (package
- (name "python-duckdb")
- (version "1.3.2")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "duckdb" version))
- (sha256
- (base32
- "1x8zb47y8lzc4w0g013sim8x9vd1h96ra3dd0bvh91y73f5dyn66"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:tests? #f ;FIXME: See <https://codeberg.org/guix/guix/issues/1436>.
- #:test-flags
- #~(list "--ignore=tests/slow/test_h2oai_arrow.py"
- ;; Do not relay on mypy.
- "--ignore=tests/stubs/test_stubs.py"
- "-k" (string-append
- ;; Don't install anything, thank you.
- "not test_install_non_existent_extension"
- ;; _pybind11_conduit_v1_ not found.
- " and not test_wrap_coverage"
- ;; See <https://github.com/duckdb/duckdb/issues/11961>.
- " and not test_fetchmany"
- ;; See <https://github.com/duckdb/duckdb/issues/10702>.
- " and not test_connection_interrupt"
- " and not test_query_interruption"))
- #:phases
- #~(modify-phases %standard-phases
- ;; Tests need this
- (add-before 'check 'set-HOME
- (lambda _ (setenv "HOME" "/tmp")))
- ;; Later versions of pybind replace "_" with "const_name".
- (add-after 'unpack 'pybind-compatibility
- (lambda _
- (with-directory-excursion "src/include/duckdb_python"
- (substitute* '("python_objects.hpp"
- "pyfilesystem.hpp"
- "pybind11/conversions/pyconnection_default.hpp")
- (("const_name") "_"))))))))
- (propagated-inputs
- (list python-adbc-driver-manager))
- (native-inputs
- (list pybind11
- python-fsspec
- ;; python-google-cloud-storage ;python-grpcio fails (see:
guix/guix#1436)
- python-numpy
- python-pandas
- python-psutil
- ;; python-pytest
- python-setuptools-scm
- python-setuptools
- python-wheel))
- (home-page "https://www.duckdb.org";)
- (synopsis "DuckDB embedded database")
- (description "DuckDB is an in-process SQL OLAP database management
-system.")
- (license license:expat)))
-
(define-public python-dulwich
(package
(name "python-dulwich")
