guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 7564f8620a6a904ea9473e2855cbef4d312ff8c4
Author: Andreas Enge <[email protected]>
AuthorDate: Tue Nov 18 17:51:56 2025 +0100
gnu: Remove python-ont-fast5-api.
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): Delete variable.
Change-Id: I32baf50001cc86436a8b07b035b595f8084306bd
---
gnu/packages/bioinformatics.scm | 46 -----------------------------------------
1 file changed, 46 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e3a390411f..5c137889ee 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22244,52 +22244,6 @@ advantage of the properties of the raw signal and
therefore is most
effective when applied to the signal dataset.")
(license license:mpl2.0)))
-(define-public python-ont-fast5-api
- (package
- (name "python-ont-fast5-api")
- (version "4.1.3")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/nanoporetech/ont_fast5_api";)
- (commit (string-append "release_" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "05zwjgdnzdrqfifhgw9rp4s22g8ysvjfhlaq9nb6p68q6mijy098"))
- (modules '((guix build utils)))
- (snippet
- '(delete-file-recursively "ont_fast5_api/vbz_plugin"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-backend #~'unittest
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'copy-plugin
- (lambda* (#:key inputs #:allow-other-keys)
- (mkdir-p "ont_fast5_api/vbz_plugin/")
- (install-file (string-append
- #$(this-package-input "vbz-compression")
- "/hdf5/lib/plugin/libvbz_hdf_plugin.so")
- "ont_fast5_api/vbz_plugin/"))))))
- (inputs
- (list vbz-compression))
- (propagated-inputs
- (list python-numpy python-h5py python-packaging python-progressbar33))
- (native-inputs
- (list python-setuptools
- python-wheel))
- (home-page "https://github.com/nanoporetech/ont_fast5_api";)
- (synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file
format")
- (description
- "This package provides a concrete implementation of the fast5 file schema
-using the generic @code{h5py} library, plain-named methods to interact with
-and reflect the fast5 file schema, and tools to convert between
-@code{multi_read} and @code{single_read} formats.")
- (license license:mpl2.0)))
-
(define-public tbsp
(let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
(revision "2"))
