guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 1d739bcc1594de90458e88e890faa22bd57c00c2
Author: Andreas Enge <[email protected]>
AuthorDate: Tue Nov 18 17:52:28 2025 +0100
gnu: Remove vbz-compression.
* gnu/packages/bioinformatics.scm (vbz-compression): Delete variable.
Fixes: guix/guix#3640
Change-Id: I996c211af44a7342cb83249c0a9347f11d324069
---
gnu/packages/bioinformatics.scm | 37 -------------------------------------
1 file changed, 37 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c137889ee..a1f791ddfb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22207,43 +22207,6 @@ datasets to ascertain that it achieves high
sensitivity and specificity in
multiple experimental contexts.")
(license license:expat)))
-(define-public vbz-compression
- (package
- (name "vbz-compression")
- (version "1.0.13")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/nanoporetech/vbz_compression/";)
- (commit version)
- ;; We include the streamvbyte sources
- (recursive? #true)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1jf5i5v0h58s7w6rhgi4w1vvxnk9jzbgmiic14d48ngr204m0w5c"))))
- (build-system cmake-build-system)
- (arguments
- `(#:configure-flags
- '("-DENABLE_CONAN=OFF"
- ;; Python things aren't even installed, so we might as well
- ;; disable building them.
- "-DENABLE_PYTHON=OFF")))
- (inputs
- (list ;("hdf5" ,hdf5-1.10)
- `(,zstd "lib")))
- (native-inputs
- (list googlebenchmark))
- (home-page "https://github.com/nanoporetech/vbz_compression/";)
- (synopsis "VBZ compression plugin for nanopore signal data")
- (description
- "VBZ Compression uses variable byte integer encoding to compress
-nanopore signal data. The performance of VBZ is achieved by taking
-advantage of the properties of the raw signal and therefore is most
-effective when applied to the signal dataset.")
- (license license:mpl2.0)))
-
(define-public tbsp
(let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
(revision "2"))
