guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit d59936ba4ee51034a5521470fcc701d9961e9044
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 13:50:53 2025 +0100
gnu: r-tximeta: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
[native-inputs]: Add r-rmarkdown.
Change-Id: I3dbc7b55c46db5ce0d39b8e107ac0aa58a25c71c
---
gnu/packages/bioconductor.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ed02dd725c..121cd27755 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28917,14 +28917,14 @@ embeddings and functions to build new reference.")
(define-public r-tximeta
(package
(name "r-tximeta")
- (version "1.26.1")
+ (version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "tximeta" version))
(sha256
(base32
- "0za6x4il9qqyrb0rf57vb2qahqdra9snfql6canmpw2ixwhhgq6n"))))
+ "0rpka083c8gw3crd1sp2vhlbk9rbyvnc6r5gnr55am73rp7dk3px"))))
(properties `((upstream-name . "tximeta")))
(build-system r-build-system)
;; Two tests fail because data files are not included.
@@ -28935,19 +28935,19 @@ embeddings and functions to build new reference.")
r-biocfilecache
r-biostrings
r-ensembldb
- r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-jsonlite
r-matrix
r-s4vectors
+ r-seqinfo
r-summarizedexperiment
r-tibble
r-txdbmaker
r-tximport))
(native-inputs
- (list r-edger r-knitr r-org-dm-eg-db r-testthat))
+ (list r-edger r-knitr r-org-dm-eg-db r-rmarkdown r-testthat))
(home-page "https://github.com/mikelove/tximeta";)
(synopsis "Transcript quantification import with automatic metadata")
(description
