guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 52c6039c5b9a4df3fbd852afabb85e87011e8e9a
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Wed Nov 26 12:30:21 2025 +0100
gnu: r-gutils: Add missing input and patch for testthat compatibility.
* gnu/packages/bioinformatics.scm (r-gutils)[arguments]: Add phase
'testthat-compatibility.
[native-inputs]: Add r-xvector.
Change-Id: I6178bb62486167445921069e0f40e122f10c838e
---
gnu/packages/bioinformatics.scm | 11 ++++++++++-
1 file changed, 10 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fe96ab492d..15af68910a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12754,6 +12754,15 @@ sankey, alluvial and sankey bump plots in
@code{ggplot2}.")
"11ijzy1zyjv2wgxrfcaan7g82jl27skd41hw4s2xh9lijkn8ilwh"))))
(properties `((upstream-name . "gUtils")))
(build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ ;; These deprecated procedures have been removed in testthat.
+ (add-after 'unpack 'testthat-compatibility
+ (lambda _
+ (substitute* "tests/testthat/test_rangeops.R"
+ (("is_true\\(\\)") "expect_true")))))))
(propagated-inputs
(list r-biocgenerics
r-data-table
@@ -12763,7 +12772,7 @@ sankey, alluvial and sankey bump plots in
@code{ggplot2}.")
r-matrix
r-s4vectors
r-stringr))
- (native-inputs (list r-testthat))
+ (native-inputs (list r-testthat r-xvector))
(home-page "https://github.com/mskilab/gUtils";)
(synopsis "Additional capabilities and speed for GenomicRanges
operations")
(description
