guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 1b1b80361a8b81902119b3aff220cd9a65c582a3
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 13:49:56 2025 +0100
gnu: r-geoquery: Update to 2.78.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.78.0.
[native-inputs]: Remove r-knitr; add r-quarto.
Change-Id: I8f7e4fd777d18f5a1798fff46fe8053eeec6ca5b
---
gnu/packages/bioconductor.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f18e3a68ee..9cc36d5b7d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -18232,14 +18232,14 @@ high-throughput analyses.")
(define-public r-geoquery
(package
(name "r-geoquery")
- (version "2.76.0")
+ (version "2.78.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GEOquery" version))
(sha256
(base32
- "17iw6h74qzljcah3m3xzl8hqzmz9v30lafwdbhdfqy8xdhf79jlh"))))
+ "1rvvfyg7qz9sd02ymfs6006dmdm200aryliripnqkm6cdjzxd4mp"))))
(properties `((upstream-name . "GEOquery")))
(build-system r-build-system)
;; Tests attempt to download data files.
@@ -18262,7 +18262,7 @@ high-throughput analyses.")
r-tidyr
r-xml2))
(native-inputs
- (list r-knitr r-testthat))
+ (list r-quarto r-testthat))
(home-page "https://github.com/seandavi/GEOquery/";)
(synopsis "Get data from NCBI Gene Expression Omnibus (GEO)")
(description
