guix_mirror_bot pushed a commit to branch master
in repository guix.
commit cf4296ecb1c451162144bf6b98e129f522d2056e
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Wed Dec 31 17:33:09 2025 +0000
gnu: cnvkit: Fix tests.
* gnu/packages/bioinformatics.scm (cnvkit):
[arguments] <phases>: Add 'fix-pytest-config.
[propagated-inputs]: Remove python-future.
Change-Id: I845709c8e91e8ed86dcc25a9d5dc0469e8005f0b
---
gnu/packages/bioinformatics.scm | 15 ++++++++++++---
1 file changed, 12 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 71c4845416..a702188bf4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21060,15 +21060,24 @@ polymorphisms) and indels with respect to a reference
genome and more.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/etal/cnvkit";)
- (commit (string-append "v" version))))
+ (url "https://github.com/etal/cnvkit";)
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "090yh17symcahddx399kcx0mcw4gdrcc2jil3p8lb92r8c8kglb5"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; tests: 70 passed, 1 warning
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-pytest-config
+ (lambda _
+ (substitute* "pyproject.toml"
+ (("filterwarnings =.*")
+ "")))))))
(propagated-inputs
(list python-biopython
- python-future
python-matplotlib
python-numpy
python-pandas
