guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 1cdc52d65d9caeb2cfb2f90636fa8215da01ca91
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Wed Feb 18 19:09:18 2026 +0100
gnu: r-seqminer: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-seqminer)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.
Change-Id: Ic2039a9c524567f17bb92fa23a0fc7d1fef5bf4e
---
gnu/packages/cran.scm | 17 ++++++-----------
1 file changed, 6 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7ec7b6b292..0bad4b975e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -52885,17 +52885,12 @@ designs. Broman et al. (2018)
<doi:10.1534/genetics.118.301595>.")
(build-system r-build-system)
(arguments
(list
- #:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'disable-bad-tests
- (lambda _
- ;; These tests fail with
- ;; "`failure_message` must be a character vector, not absent."
- (substitute* "tests/testthat/test-vcf.R"
- ((".*createSingleChromosomeBCFIndex.*" m)
- (string-append m "skip('skip')\n"))
- ((".*createSingleChromosomeVCFIndex.*" m)
- (string-append m "skip('skip')\n"))))))))
+ #:skipped-tests
+ ;; These tests fail with
+ ;; "`failure_message` must be a character vector, not absent."
+ '(("test-vcf.R"
+ "createSingleChromosomeBCFIndex"
+ "createSingleChromosomeVCFIndex"))))
(inputs (list bzip2 sqlite (list zstd "lib") zlib))
(native-inputs (list r-testthat))
(home-page "http://seqminer.genomic.codes";)
