guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 66cd1b9c6a2171b7a42d0373438ba246b59394ec
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Wed Feb 18 19:08:14 2026 +0100
gnu: r-seqminer: Add missing inputs.
* gnu/packages/cran.scm (r-seqminer)[inputs]: Add bzip2, sqlite, and
zstd:lib.
[properties]: Record updater-extra-inputs.
Change-Id: I3cce94e1368a3376185203b19cbd416ce05ceb44
---
gnu/packages/cran.scm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6e73b33740..7ec7b6b292 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -52879,6 +52879,9 @@ designs. Broman et al. (2018)
<doi:10.1534/genetics.118.301595>.")
(sha256
(base32
"15dkh4wfszfrpfpwyhnwj3bnkjfxm17bp0grr1wf4h6zxj0jbkp5"))))
+ ;; If these inputs are not found at configure time they will be built from
+ ;; bundled sources.
+ (properties '((updater-extra-inputs . ("bzip2" "sqlite" "zstd"))))
(build-system r-build-system)
(arguments
(list
@@ -52893,8 +52896,7 @@ designs. Broman et al. (2018)
<doi:10.1534/genetics.118.301595>.")
(string-append m "skip('skip')\n"))
((".*createSingleChromosomeVCFIndex.*" m)
(string-append m "skip('skip')\n"))))))))
- (inputs
- (list zlib))
+ (inputs (list bzip2 sqlite (list zstd "lib") zlib))
(native-inputs (list r-testthat))
(home-page "http://seqminer.genomic.codes";)
(synopsis "Read nucleotide sequence data (VCF, BCF, and METAL formats)")
