guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit f89dc5ec37f08dfadbf3e9a12df9e12a5b0d4ab6
Author: Hugo Buddelmeijer <[email protected]>
AuthorDate: Sun Jul 12 22:17:02 2026 +0200
gnu: python-kalepy: Fix build.
* gnu/packages/statistics.scm (python-kalepy): Fix build.
[source]<origin>: Switch to git-fetch.
<patches>: Add patch for NumPy compatibility.
[arguments]<#:phases>: Add 'fix-trapz phase.
<#:test-flags>: Enable all tests.
Relates-to: guix/guix!9885
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/statistics.scm | 50 ++++++++++++++++++++++++++++++---------------
1 file changed, 34 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 4e4aaa073b..96c2c58eb2 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1297,26 +1297,44 @@ building design matrices.")
(version "1.4.3")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "kalepy" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/lzkelley/kalepy/";)
+ ;; Version is not tagged; this commit is "bump version 1.4.3".
+ (commit "6feb380cd4f6face912a4b370c99e03fe3cdca54")))
+ (file-name (git-file-name name version))
(sha256
- (base32 "1a1d98vjkjs8zwx4hdss3gv67jyf25mmsrdc5qi8hpxminkizb6w"))))
+ (base32 "1rpjiak0zcki6plfvdyhmw0km9jd7i5q57gb0hr8m4pmlbam0rk6"))
+ (patches
+ (list
+ (origin
+ ;; Improve compatibility with NumPy 2.
+ ;; https://github.com/lzkelley/kalepy/pull/21
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/lzkelley/kalepy/commit/";
+ "ae329546d128532eb6fd1cee0c4e65c1d537e26c.patch"))
+ (file-name "python-kalepy-pull-request-21.patch")
+ (sha256
+ (base32
+ "049mijr4vqckzx7iww9ihpskd135nrl0zfii6sr6ahqglvknj5an")))))))
(build-system pyproject-build-system)
+ ;; tests: 52 passed
(arguments
(list
- ;; tests: 46 passed, 6 deselected, 214 warnings
- #:test-flags
- ;; XXX: See: <https://github.com/lzkelley/kalepy/issues/22>.
- ;; AttributeError: module 'numpy' has no attribute 'product'
- #~(list #$@(map (lambda (test) (string-append "--deselect="
- "kalepy/tests/"
- "test_utils.py::"
- test))
- (list "Test_Midpoints::test_midpoints_lin"
- "Test_Midpoints::test_midpoints_log"
- "Test_Trapz::test_nd"
- "Test_Trapz_Dens_To_Mass::test_ndim"
- "Test_Trapz_Dens_To_Mass::test_ndim_a2")))))
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; trapz is removed in NumPy 2.4.6, and is now called trapezoid.
+ ;; See <https://github.com/lzkelley/kalepy/pull/21>.
+ (add-after 'unpack 'fix-trapz
+ (lambda _
+ (substitute*
+ (list "notebooks/kernels.ipynb"
+ "kalepy/utils.py"
+ "kalepy/tests/test_distributions.py"
+ "kalepy/tests/test_utils.py"
+ "kalepy/tests/test_kernels.py")
+ (("np.trapz\\(") "np.trapezoid(")))))))
(native-inputs
(list python-pytest
python-setuptools))
