guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit ed7b3f5e3a237f8922b624c910b8f79841d7b7d9
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sat Jul 11 23:36:03 2026 +0100
gnu: python-mudata: Update to 0.3.10.
* gnu/packages/bioinformatics.scm (python-mudata): Update to 0.3.10.
[arguments] <#:test-flags>: Skip one test.
[propagated-inputs]: Add python-numpy, python-scipy,
python-scverse-misc, python-session-info2, python-fsspec, and
python-zarr.
[native-inputs]: Remove python-numpy and python-zarr.
---
gnu/packages/bioinformatics.scm | 39 ++++++++++++++++++++++++++-------------
1 file changed, 26 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0d122a1273..d5ee61a670 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5931,24 +5931,37 @@ with MOFA+ in Python.")
(define-public python-mudata
(package
(name "python-mudata")
- (version "0.3.2")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/scverse/mudata";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "17s1w3746d35pcwr97ynhr7s5hfk76vsfcinwyqynx9k3xxi9br4"))))
+ (version "0.3.10")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/scverse/mudata";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1s0vkxmbw6kbyl5pxgr296g9g0wpjggzcxrj5i67lgg1kzxkqb8k"))))
(build-system pyproject-build-system)
- (propagated-inputs
- (list python-anndata python-h5py python-pandas))
+ (arguments
+ (list
+ ;; tests: 484 passed, 1 deselected, 2 xfailed, 1343 warnings
+ #:test-flags
+ ;; TypeError: MetaAcc.get() missing 1 required positional argument: 'k'
+ #~(list "--deselect=tests/test_obs_var.py::test_accessors")))
(native-inputs
(list python-hatch-vcs
python-hatchling
+ python-pytest))
+ (propagated-inputs
+ (list python-anndata
+ python-h5py
python-numpy
- python-pytest
+ python-pandas
+ python-scipy
+ python-scverse-misc
+ python-session-info2
+ ;; [optional]
+ python-fsspec
python-zarr))
(home-page "https://github.com/scverse/mudata";)
(synopsis "Python package for multi-omics data analysis")
