guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 862f17e630c50a97fb279206d9715958f28c44e0
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sat Jun 27 22:01:24 2026 +0100
gnu: python-numcodecs: Update to 0.15.1.
* gnu/packages/python-xyz.scm (python-numcodecs): Update to
0.15.1. Apply G-Expressions.
[source]: Switch to git-fetch.
[phases] {build-extensions}: Remove phase.
{check}: Use custom phase.
{substitute-git-submodules}: New phase.
[propagated-inputs]: Remove python-google-crc32c and
python-importlib-metadata; add python-deprecated.
[native-inputs]: Remove python-pydata-sphinx-theme, python-sphinx, and
python-sphinx-issues.
---
gnu/packages/python-xyz.scm | 88 +++++++++++++++++++++++----------------------
1 file changed, 45 insertions(+), 43 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f8304e2fb4..0ef9b2e613 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -28354,16 +28354,16 @@ tool).")
(define-public python-numcodecs
(package
(name "python-numcodecs")
- (version "0.13.1")
- ;; python-zarr does not want versions 0.14.0 or 0.14.1.
- ;;(version "0.14.1")
+ (version "0.15.1") ;newer version needs c-blosc 1.26+
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "numcodecs" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/zarr-developers/numcodecs";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32
- "1g09fwhgmhmw66x5gzmzhm8yhgqki3gpfi0dkhx8z2gh3n43gkx3"))
+ (base32 "19i30k4zn6rjqlrfk20yh75r1di3j7mli2mn9n3pyxmwaq7hiasz"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -28378,48 +28378,50 @@ tool).")
(build-system pyproject-build-system)
(arguments
(list
- #:test-flags
- ;; zarr isn't available, because it dependes on this package.
- '(list "-k" "not test_zarr3_import")
+ ;; tests: 714 passed, 39 skipped, 36 xfailed, 20 warnings
#:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'disable-avx2
- (lambda _
- (setenv "DISABLE_NUMCODECS_AVX2" "1")))
- (add-after 'unpack 'unbundle
- (lambda _
- (substitute* "setup.py"
- (("sources=sources \\+ blosc_sources,")
- "sources=sources,")
- (("extra_compile_args=extra_compile_args")
- "extra_compile_args=list(base_compile_args)")
- (("'numcodecs.zstd',")
- "'numcodecs.zstd', libraries=['zstd'], ")
- (("'numcodecs.lz4',")
- "'numcodecs.lz4', libraries=['lz4'], ")
- (("'numcodecs.blosc',")
- "'numcodecs.blosc', libraries=['blosc'], "))))
- (add-before 'check 'build-extensions
- (lambda _
- ;; Cython extensions have to be built before running the tests.
- (invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (inputs
- (list c-blosc lz4 zlib
- `(,zstd "lib")))
- (propagated-inputs
- (list python-google-crc32c
- python-importlib-metadata
- python-msgpack
- python-numpy))
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'disable-avx2
+ (lambda _
+ (setenv "DISABLE_NUMCODECS_AVX2" "1")))
+ (add-after 'unpack 'unbundle
+ (lambda _
+ (substitute* "setup.py"
+ (("sources=sources \\+ blosc_sources,")
+ "sources=sources,")
+ (("extra_compile_args=extra_compile_args")
+ "extra_compile_args=list(base_compile_args)")
+ (("'numcodecs.zstd',")
+ "'numcodecs.zstd', libraries=['zstd'], ")
+ (("'numcodecs.lz4',")
+ "'numcodecs.lz4', libraries=['lz4'], ")
+ (("'numcodecs.blosc',")
+ "'numcodecs.blosc', libraries=['blosc'], "))))
+ (add-before 'build 'substitute-git-submodules
+ (lambda _
+ (symlink #$(package-source (this-package-input "c-blosc"))
+ "c-blosc")))
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (with-directory-excursion #$output
+ (apply invoke "pytest" "-vv" test-flags)
+ (delete-file-recursively ".pytest_cache")))))))
(native-inputs
(list python-cython
python-py-cpuinfo
- python-pydata-sphinx-theme
python-pytest
python-setuptools
- python-setuptools-scm ;for correct version
- python-sphinx
- python-sphinx-issues))
+ python-setuptools-scm))
+ (inputs
+ (list c-blosc
+ lz4
+ zlib
+ (list zstd "lib")))
+ (propagated-inputs
+ (list python-deprecated
+ python-numpy
+ ;; [optional]
+ python-msgpack))
(home-page "https://github.com/zarr-developers/numcodecs";)
(synopsis "Buffer compression and transformation codecs")
(description
