guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit a7dab7562fe8b9e60f36bc594feece7bcca23f4c
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sat Jun 27 22:45:05 2026 +0100
gnu: python-zarr: Update to 3.2.1.
* gnu/packages/python-xyz.scm (python-zarr): Update to 3.2.1.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Run tests in a single thread, otherwise they
fail to start; do not run benchmark tests, skip tests depending on uv.
[phases]{set-version}: Remove phase.
[propagated-inputs]: Remove python-asciitree and python-fasteners; add
python-donfig, python-google-crc32c, python-packaging, and
python-typing-extensions.
[native-inputs]: Remove python-pytest-xdist, python-setuptools, and
python-wheel; add python-hatch-vcs, python-hatchling, python-numpydoc,
python-pytest-asyncio, python-pytest-benchmark, and python-tomlkit.
---
gnu/packages/python-xyz.scm | 51 ++++++++++++++++++++++-----------------------
1 file changed, 25 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0ef9b2e613..58787b0997 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -42900,48 +42900,47 @@ and XML respectively. The processing is done through
@command{jq},
(define-public python-zarr
(package
(name "python-zarr")
- (version "2.18.7")
+ (version "3.2.1")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "zarr" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/zarr-developers/zarr-python";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32
- "1xbjjpjskykbdskck5p1f0grh6wq36437ll0n5kazi6s2ipzdf5j"))))
+ (base32 "1qzbpy6j8mgpr6wb69j8yyjyr95rmagn64v8pcdljjl3969rmjf6"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 5339 passed, 384 skipped, 1 deselected, 7 xfailed
#:test-flags
- #~(list "--numprocesses" (number->string (parallel-job-count))
- ;; This tests are flaky. The pass several times on my laptop
- ;; but occasionally fail. They fail pretty reliably on the
- ;; build farm.
- "-k" (string-append "not test_lazy_loader and not open_array"
- ;; File not found.
- " and not test_filesystem_path"))
+ #~(list "--ignore=tests/benchmarks/"
+ ;; This test wants uv.
+ (string-append "--deselect=tests/test_examples.py"
+ "::test_scripts_can_run[script_path0]"))
#:phases
#~(modify-phases %standard-phases
- (add-before 'build 'set-version
- (lambda _
- (substitute* "pyproject.toml"
- (("^version_file.*") "")
- (("dynamic = \\[\"version\"\\]")
- (string-append "version = \"" #$version "\"")))))
(add-after 'unpack 'disable-service-tests
(lambda _
(setenv "ZARR_TEST_ABS" "0")
(setenv "ZARR_TEST_MONGO" "0")
(setenv "ZARR_TEST_REDIS" "0"))))))
+ (native-inputs
+ (list python-hatch-vcs
+ python-hatchling
+ python-numpydoc ;tests/test_api/test_synchronous.py
+ python-pytest
+ python-pytest-asyncio
+ python-pytest-benchmark
+ python-tomlkit))
(propagated-inputs
- (list python-asciitree
- python-fasteners
+ (list python-donfig
+ python-google-crc32c
python-numcodecs
- python-numpy))
- (native-inputs
- (list python-pytest
- python-pytest-xdist
- python-setuptools
- python-wheel))
+ python-numpy
+ python-packaging
+ python-typing-extensions))
(home-page "https://github.com/zarr-developers/zarr-python";)
(synopsis "Chunked, compressed, N-dimensional arrays for Python")
(description
