What does one of your database URLs look like?

Are you perhaps call Thread.interrupt somewhere?

If so, that would close the database abruptly and force it to be re-opened on 
the next connection attempt.

Doing that enough times is likely to cause corruption, because all kinds of stuff could be in-flight and unwritten to actual physical storage.

That is currently our weak link - we are not sufficiently tolerant of systems with large write queues that re-order stuff before it hits disk.

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