Hi - yes, these are CIFTI files (ie in grayordinates - see the various HCP papers for details), saved within the ".nii" convention. Most software (eg in FSL) does not *yet* in general have the ability to work with these.
Depending on what files you chose to download, there are also available "standard" 3D/4D NIFTI files (eg in MNI space). If you don't have those, and want them, you can go back to the downloads page and should be able to find them. Cheers. On 14 Aug 2014, at 10:58, Michel Thiebaut de Schotten <[email protected]> wrote: > Hi Steve, > > thanks for your prompt reply. > the full name of the files I'm trying to open are > > rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii > rfMRI_REST1_RL_Atlas_hp2000_clean.dtseries.nii > rfMRI_REST2_LR_Atlas_hp2000_clean.dtseries.nii > rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii > > Cheers > > michel > > > On 14 Aug 2014, at 10:55, Stephen Smith wrote: > >> Hi - what is the *full* name of the file you're trying to open? It's >> possible that this is a CIFTI file, which you can see in HCP's wb_view >> viewer (previously called "workbench"), or else can open in matlab with the >> right toolkits. >> >> Cheers. >> >> >> >> On 14 Aug 2014, at 10:43, Michel Thiebaut de Schotten >> <[email protected]> wrote: >> >>> Dear all, >>> >>> I tried to open the rfMRI_REST_fix version of the resting state but the >>> nifti does not open with anything (neither fslview nor MRIcron/Mipav). >>> >>> I was wondering whether you could check whether this is coming from me or >>> from the upload on the server. >>> thanks a lot for your work. >>> Kind regards >>> >>> >>> michel >>> >>> >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> [email protected] >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> --------------------------------------------------------------------------- >> Stephen M. Smith, Professor of Biomedical Engineering >> Associate Director, Oxford University FMRIB Centre >> >> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK >> +44 (0) 1865 222726 (fax 222717) >> [email protected] http://www.fmrib.ox.ac.uk/~steve >> --------------------------------------------------------------------------- >> >> Stop the cultural destruction of Tibet >> >> >> >> > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [email protected] http://www.fmrib.ox.ac.uk/~steve --------------------------------------------------------------------------- Stop the cultural destruction of Tibet _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
