Re: [HCP-Users] rfMRI_REST_fix

[Harms, Michael]

Hi, The 4D NIFTI files in MNI152 space are called rfMRI_REST{1,2}_{LR,RL}_hp2000_clean.nii.gz and are available as part of the "FIX Extended" packages. cheers, -MH --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: Stephen Smith <st...@fmrib.ox.ac.uk> Date: Thursday, August 14, 2014 5:03 AM To: Michel Thiebaut de Schotten <michel.thieb...@gmail.com> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] rfMRI_REST_fix Hi - yes, these are CIFTI files (ie in grayordinates - see the various HCP papers for details), saved within the ".nii" convention.  Most software (eg in FSL) does not *yet* in general have the ability to work with these. Depending on what files you chose to download, there are also available "standard" 3D/4D NIFTI files (eg in MNI space).  If you don't have those, and want them, you can go back to the downloads page and should be able to find them. Cheers. On 14 Aug 2014, at 10:58, Michel Thiebaut de Schotten <michel.thieb...@gmail.com> wrote: Hi Steve, thanks for your prompt reply. the full name of the files I'm trying to open are  rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii rfMRI_REST1_RL_Atlas_hp2000_clean.dtseries.nii rfMRI_REST2_LR_Atlas_hp2000_clean.dtseries.nii rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii Cheers michel On 14 Aug 2014, at 10:55, Stephen Smith wrote: Hi - what is the *full* name of the file you're trying to open?   It's possible that this is a CIFTI file, which you can see in HCP's wb_view viewer (previously called "workbench"), or else can open in matlab with the right toolkits. Cheers. On 14 Aug 2014, at 10:43, Michel Thiebaut de Schotten <michel.thieb...@gmail.com> wrote: Dear all, I tried to open the rfMRI_REST_fix version of the resting state but the nifti does not open with anything (neither fslview nor MRIcron/Mipav). I was wondering whether you could check whether this is coming from me or from the upload on the server. thanks a lot for your work. Kind regards michel _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director,  Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK +44 (0) 1865 222726  (fax 222717) st...@fmrib.ox.ac.uk    http://www.fmrib.ox.ac.uk/~steve --------------------------------------------------------------------------- Stop the cultural destruction of Tibet --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director,  Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK +44 (0) 1865 222726  (fax 222717) st...@fmrib.ox.ac.uk    http://www.fmrib.ox.ac.uk/~steve --------------------------------------------------------------------------- Stop the cultural destruction of Tibet _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users