Hi Michael, I'd second Satra's request: it'd be great to have the original FS directory structure available somewhere -- many of us have scripts that expect that file structure, and also those same file formats that are very easy to read. Thanks! All the best, Anderson
On 4 September 2014 15:23, Harms, Michael <[email protected]> wrote: > > Hi, > If you can wait just a little bit longer, you'll be able to see all the > exact commands when we release the pipeline scripts, and you won't need to > reverse-engineer anything. I think that would be the most efficient way > for you to proceed. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: Satrajit Ghosh <[email protected]> > Date: Thursday, September 4, 2014 9:15 AM > To: "Harms, Michael" <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] freesurfer directory structure for 32k average > > hi michael, > > if i understand correctly these directories contain <subjID>'s data in > that fsaverage_LR32k space. (from here i can reverse engineer parts of the > fsaverage_32k freesurfer directory structure, but i was specifically > wondering if information about fsaverage_32k was available somewhere). > > let's say i wanted to register my own data to that same fsaverage_32k > space, it would be good to have the freesurfer directory corresponding to > fsaverage_32k. > > i'm assuming at some point in the HCP processing the individual surfaces > were registered to this average space and that if done through freesurfer > would have required a tif file containing information about the template > and the fsaverage_32k directory or a mapping from freesurfer's fsaverage to > fsaverage_32k. > > cheers, > > satra > > On Thu, Sep 4, 2014 at 10:03 AM, Harms, Michael <[email protected]> wrote: > >> >> Hi Satra, >> Can you be a little more specific about what you are asking for? >> There are the <subjID>/MNINonLinear/fsaverage_LR32k and >> <subjID>/T1w/fsaverage_LR32k directories. >> >> cheers, >> -MH >> >> -- >> Michael Harms, Ph.D. >> ----------------------------------------------------------- >> Conte Center for the Neuroscience of Mental Disorders >> Washington University School of Medicine >> Department of Psychiatry, Box 8134 >> 660 South Euclid Ave. Tel: 314-747-6173 >> St. Louis, MO 63110 Email: [email protected] >> >> From: Satrajit Ghosh <[email protected]> >> Date: Thursday, September 4, 2014 7:08 AM >> To: "[email protected]" <[email protected]> >> Subject: [HCP-Users] freesurfer directory structure for 32k average >> >> hi folks, >> >> is there a freesurfer directory available for the 32k average entity? >> >> i could try to create pieces of such a directory based on the cifti >> info, but i figured this might actually exist somewhere. >> >> cheers, >> >> satra >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
