thanks dan! cheers,
satra On Thu, Sep 4, 2014 at 10:48 AM, Marcus, Dan <[email protected]> wrote: > Anderson, Satra, > > We are planning to distribute the Freesurfer directories as a patch to > the current release and to include them in future releases. I'm not sure > of the exact timeline for the patch, but I'd think sometime in the coming > weeks. > > -Dan > > From: "Anderson M. Winkler" <[email protected]> > Date: Thursday, September 4, 2014 9:26 AM > > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] freesurfer directory structure for 32k average > > Hi Michael, > I'd second Satra's request: it'd be great to have the original FS > directory structure available somewhere -- many of us have scripts that > expect that file structure, and also those same file formats that are very > easy to read. Thanks! > All the best, > Anderson > > > On 4 September 2014 15:23, Harms, Michael <[email protected]> wrote: > >> >> Hi, >> If you can wait just a little bit longer, you'll be able to see all the >> exact commands when we release the pipeline scripts, and you won't need to >> reverse-engineer anything. I think that would be the most efficient way >> for you to proceed. >> >> cheers, >> -MH >> >> -- >> Michael Harms, Ph.D. >> ----------------------------------------------------------- >> Conte Center for the Neuroscience of Mental Disorders >> Washington University School of Medicine >> Department of Psychiatry, Box 8134 >> 660 South Euclid Ave. Tel: 314-747-6173 >> St. Louis, MO 63110 Email: [email protected] >> >> From: Satrajit Ghosh <[email protected]> >> Date: Thursday, September 4, 2014 9:15 AM >> To: "Harms, Michael" <[email protected]> >> Cc: "[email protected]" <[email protected]> >> Subject: Re: [HCP-Users] freesurfer directory structure for 32k average >> >> hi michael, >> >> if i understand correctly these directories contain <subjID>'s data in >> that fsaverage_LR32k space. (from here i can reverse engineer parts of the >> fsaverage_32k freesurfer directory structure, but i was specifically >> wondering if information about fsaverage_32k was available somewhere). >> >> let's say i wanted to register my own data to that same fsaverage_32k >> space, it would be good to have the freesurfer directory corresponding to >> fsaverage_32k. >> >> i'm assuming at some point in the HCP processing the individual >> surfaces were registered to this average space and that if done through >> freesurfer would have required a tif file containing information about the >> template and the fsaverage_32k directory or a mapping from freesurfer's >> fsaverage to fsaverage_32k. >> >> cheers, >> >> satra >> >> On Thu, Sep 4, 2014 at 10:03 AM, Harms, Michael <[email protected]> wrote: >> >>> >>> Hi Satra, >>> Can you be a little more specific about what you are asking for? >>> There are the <subjID>/MNINonLinear/fsaverage_LR32k and >>> <subjID>/T1w/fsaverage_LR32k directories. >>> >>> cheers, >>> -MH >>> >>> -- >>> Michael Harms, Ph.D. >>> ----------------------------------------------------------- >>> Conte Center for the Neuroscience of Mental Disorders >>> Washington University School of Medicine >>> Department of Psychiatry, Box 8134 >>> 660 South Euclid Ave. Tel: 314-747-6173 >>> St. Louis, MO 63110 Email: [email protected] >>> >>> From: Satrajit Ghosh <[email protected]> >>> Date: Thursday, September 4, 2014 7:08 AM >>> To: "[email protected]" <[email protected]> >>> Subject: [HCP-Users] freesurfer directory structure for 32k average >>> >>> hi folks, >>> >>> is there a freesurfer directory available for the 32k average entity? >>> >>> i could try to create pieces of such a directory based on the cifti >>> info, but i figured this might actually exist somewhere. >>> >>> cheers, >>> >>> satra >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> [email protected] >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> >>> ------------------------------ >>> >>> The materials in this message are private and may contain Protected >>> Healthcare Information or other information of a sensitive nature. 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