Re: [HCP-Users] failed to find header file for 'rfMRI_REST1_LR'

[Harms, Michael]

'dcm2nii' is a DICOM to NIFTI converter.  Since the HCP doesn't release the DICOMs, you have no reason to apply it to HCP data. As for fslsplit, if you want us to attempt to help you, we need specifics!  Namely, the exact command that you tried to run, and the exact file that you tried to run it on.  It would also be relevant to know what type of machine you are using, and how much RAM it has. --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: yamur osmanova <yamur.osmanova1...@gmail.com> Date: Wednesday, January 21, 2015 2:13 PM To: "Harms, Michael" <mha...@wustl.edu> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] failed to find header file for 'rfMRI_REST1_LR' Hi Michael I'm trying to convert the 4D images to 3D ones. Neither "dcm2nii" ( developed by chris roden) nor fslsplit (FSL command) doesn't work. Really appreciate your help. Thanks, Yamur On Wed, Jan 21, 2015 at 11:30 PM, Harms, Michael <mha...@wustl.edu> wrote: Hi, You're going to need to provide more specifics, such as exactly what commands you used. cheers, -MH --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: yamur osmanova <yamur.osmanova1...@gmail.com> Date: Wednesday, January 21, 2015 1:42 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] failed to find header file for 'rfMRI_REST1_LR' Dear Matt and HCP list There is some thing wrong with rest images,following is the result of fslsplit ERROR (nifti_image_read): failed to find header file for 'rfMRI_REST1_LR' ** ERROR: nifti_image_open(rfMRI_REST1_LR): bad header info Error: failed to open file rfMRI_REST1_LR Cannot open volume rfMRI_REST1_LR for reading! Any suggestions? Thanks, Yamur _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users