Dear Michael 2012 version of 'dcm2nii' has bunch of other options (nii2img,4Dto3D and ...)! ok, I will report all my attempts detailed. Let me try some other tools as well.
On Wed, Jan 21, 2015 at 11:48 PM, Harms, Michael <[email protected]> wrote: > > 'dcm2nii' is a DICOM to NIFTI converter. Since the HCP doesn't release > the DICOMs, you have no reason to apply it to HCP data. > As for fslsplit, if you want us to attempt to help you, we need > specifics! Namely, the exact command that you tried to run, and the exact > file that you tried to run it on. It would also be relevant to know what > type of machine you are using, and how much RAM it has. > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: yamur osmanova <[email protected]> > Date: Wednesday, January 21, 2015 2:13 PM > To: "Harms, Michael" <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] failed to find header file for 'rfMRI_REST1_LR' > > Hi Michael > > I'm trying to convert the 4D images to 3D ones. Neither "dcm2nii" ( > developed by chris roden) nor fslsplit (FSL command) doesn't work. > Really appreciate your help. > > Thanks, > Yamur > > On Wed, Jan 21, 2015 at 11:30 PM, Harms, Michael <[email protected]> wrote: > >> >> Hi, >> You're going to need to provide more specifics, such as exactly what >> commands you used. >> >> cheers, >> -MH >> >> -- >> Michael Harms, Ph.D. >> ----------------------------------------------------------- >> Conte Center for the Neuroscience of Mental Disorders >> Washington University School of Medicine >> Department of Psychiatry, Box 8134 >> 660 South Euclid Ave. Tel: 314-747-6173 >> St. Louis, MO 63110 Email: [email protected] >> >> From: yamur osmanova <[email protected]> >> Date: Wednesday, January 21, 2015 1:42 PM >> To: "[email protected]" <[email protected]> >> Subject: [HCP-Users] failed to find header file for 'rfMRI_REST1_LR' >> >> Dear Matt and HCP list >> >> There is some thing wrong with rest images,following is the result of >> fslsplit >> >> ERROR (nifti_image_read): failed to find header file for >> 'rfMRI_REST1_LR' >> ** ERROR: nifti_image_open(rfMRI_REST1_LR): bad header info >> Error: failed to open file rfMRI_REST1_LR >> Cannot open volume rfMRI_REST1_LR for reading! >> >> Any suggestions? >> >> Thanks, >> Yamur >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
