Re: [HCP-Users] Regarding: No FieldMap_Magnitude in lifespan dataset

[Harms, Michael]

For Lifespan, there should be pair of SpinEchoFieldMap scans that you use for correction of the T1w/T2w scans instead.  You'll need to change the launch script appropriately to use the different approach. cheers, -MH --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: Sampada Sinha <drsampadasi...@gmail.com> Date: Friday, February 6, 2015 8:44 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] Regarding: No FieldMap_Magnitude in lifespan dataset Dear HCP team members, We are trying to do structural and resting resting state analysis using data from lifespan project. Since the usage of HCP pipelines (https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage) is for example data set we get the following error after 40 mins of running Prefreesurfer analysis: Cannot open volume /home/xxx/xxx/xxx/HCP_data//LS2001/unprocessed/3T/T1w_MPR 1/LS2001_3T_FieldMap_Magnitude for reading! For reference when I looked up for the same volume in folderT1w of example dataset it had a FieldMap_Magnitude file but the same file of fieldMap_Magnitude file is not there in T1 or T2 folder of the life span dataset. Can you please let me know what should I do to get the HCPPipelines running again for the downloaded data from the lifespan project?? Will appreciate any input. Thanks and regards, Sampada --  Sampada Sinha Post-doctoral associate University of Minnesota (East Bank) Molecular and neuroimaging laboratory Department of Psychiatry Minneapolis-55415 Phone number: 718-913-0636 email: sin...@umn.edu         : drsampadasi...@gmail.com ​Interest: Neuroimaging, DTI, rsfMRI, tfMRI​ _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users