Dear Experts,
I am trying to create a parcellated connectome from a label file based off of the Gordon et al., 2014 (Cerebral Cortex) paper. They have provided a dlabel.nii file consisting of 333 parcels in both the left (162 parcels) and right (172 parcels) hemispheres (http://www.nil.wustl.edu/labs/petersen/Resources.html). Eventually, I would like to acquire the time series for subcortical and cerebellar areas for a whole brain parcellated connectome, but this would be the first step. I would like to get a series of text files (or even better: a single text file with each parcel/ROI as a single column) for each subject based off of the label file provided by Gordon et al. I am not sure exactly what to do here. I have been reading through the posts on the forum and assume I might perhaps start with the -cifti-parcellate command: wb_command -cifti-parcellate <s_001_dtseries.nii> <gordon_LR.dlabel.nii> COLUMN <output.nii> I assume (hope?) the output file contains the average time series for each parcel as defined from the gordon_LR.dlabel.nii file?? However, I am unsure how I would acquire the time series information in text file form from this output file. Am I even in the right ballpark here?? Any help would be appreciated as I have not worked with surface data yet. Thanks in advance! best, Jason _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
