Is it Connectome in a Box data? Which version do you have (when did you get 
it)? Or did you download an earlier version of the data from ConnectomeDB, or 
not get the task analysis packages?

 

Jenn

 

Jennifer Elam, Ph.D.
Outreach Coordinator, Human Connectome Project
Washington University School of Medicine
Department of Anatomy and Neurobiology, Box 8108
660 South Euclid Avenue
St. Louis, MO 63110
314-362-9387
[email protected]
www.humanconnectome.org

 

From: [email protected] 
[mailto:[email protected]] On Behalf Of mohamad reza
Sent: Monday, July 27, 2015 5:16 AM
To: Glasser, Matthew; [email protected]
Subject: Re: [HCP-Users] prepare_level2_feat_analysis.sh

 

Thanks for your reply

 

The problem is i don't have access to high speed internet for downloading the 
data right now

I have the data on a hard disk 

 

regards

 

 

 

On Sunday, July 26, 2015 9:18 PM, "Glasser, Matthew" <[email protected]> 
wrote:

 

Why are you doing it this way instead of just using the already analyzed task 
fMRI data?

 

Peace,

 

Matt.

 

From: <[email protected]> on behalf of Mohamad Reza Khodai 
<[email protected]>
Reply-To: Mohamad Reza Khodai <[email protected]>
Date: Sunday, July 26, 2015 at 11:00 AM
To: "[email protected]" <[email protected]>, Mohamad 
Reza Khodai <[email protected]>
Subject: [HCP-Users] prepare_level2_feat_analysis.sh

 

Dear HCP users

 

I am trying to perform a 2nd level GLM analyis(using fsl) on fMRI working 
memory data. In order to do that,i need to have a registration folder.

I noticed that there is a bash file for this propose. So i downloaded 
''prepare_level2_feat_analysis.sh'' file.

I tried to run this file using commands bellow :

 

chmod +x prepare_level2_feat_analysis.sh

 

./prepare_level2_feat_analysis.sh

 

 

but i got the following results:

 

 

The input must be a fsf file
Usage: prepare_level2_feat_analysis.sh <Level2_fsf_file>
Prepares lower-level .feat directories for higher-level analyses

 

Any ideas?

 

regards

Mohammad

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