Dear Sir, I have did the same and dowloaded libnetcdf.so.6 this is what i have got as output, i will run the pipeline and i will let you know if it works properly.
" -rw-r--r-- 1 root root 10200 Okt 5 2012 libnatpmp.so.1 lrwxrwxrwx 1 root root 30 Mär 23 15:53 libnautilus-extension.so.1 -> libnautilus-extension.so.1.4.0 -rw-r--r-- 1 root root 39408 Nov 6 10:29 libnautilus-extension.so.1.4.0 lrwxrwxrwx 1 root root 24 Mär 23 15:53 libneon-gnutls.so.27 -> libneon-gnutls.so.27.3.0 -rw-r--r-- 1 root root 159368 Dez 18 2013 libneon-gnutls.so.27.3.0 lrwxrwxrwx 1 root root 22 Feb 24 2014 libnetcdf_c++.so.4 -> libnetcdf_c++.so.4.1.0 -rw-r--r-- 1 root root 117608 Feb 24 2014 libnetcdf_c++.so.4.1.0 lrwxrwxrwx 1 root root 22 Nov 7 2011 libnetcdf_c++.so.5 -> libnetcdf_c++.so.5.0.0 -rw-r--r-- 1 root root 117640 Nov 7 2011 libnetcdf_c++.so.5.0.0 lrwxrwxrwx 1 root root 19 Nov 7 2011 libnetcdff.so.5 -> libnetcdff.so.5.0.0 -rw-r--r-- 1 root root 438352 Nov 7 2011 libnetcdff.so.5.0.0 lrwxrwxrwx 1 root root 18 Nov 7 2011 libnetcdf.so.6 -> libnetcdf.so.6.0.0 -rw-r--r-- 1 root root 1257744 Nov 7 2011 libnetcdf.so.6.0.0 lrwxrwxrwx 1 root root 18 Feb 24 2014 libnetcdf.so.7 -> libnetcdf.so.7.1.1 -rw-r--r-- 1 root root 1246112 Feb 24 2014 libnetcdf.so.7.1.1 lrwxrwxrwx 1 root root 19 Nov 7 2009 libnewmat.so.10 -> libnewmat.so.10.0.0 -rw-r--r-- 1 root root 354640 Nov 7 2009 libnewmat.so.10.0.0 lrwxrwxrwx 1 root root 20 Okt 6 2014 libnifticdf.so.2 -> libnifticdf.so.2.0.0 -rw-r--r-- 1 root root 109808 Okt 6 2014 libnifticdf.so.2.0.0 lrwxrwxrwx 1 root root 19 Okt 6 2014 libniftiio.so.2 -> libniftiio.so.2.0.0 -rw-r--r-- 1 root root 133376 Okt 6 2014 libniftiio.so.2.0.0 lrwxrwxrwx 1 root root 18 Mär 23 15:53 libnm-gtk.so.0 -> libnm-gtk.so.0.0.0 -rw-r--r-- 1 root root 181872 Jul 23 2015 libnm-gtk.so.0.0.0 " Thanks Vasudev On 24 March 2016 at 22:18, Timothy B. Brown <[email protected]> wrote: > Hi Vasudev, > > It appears based on the link that you supplied ( > http://packages.ubuntu.com/precise/i386/libnetcdf6/download) that you > have downloaded and installed the 32-bit version of the libnetcdf.so.6 > library. The pipelines would not be expected to run under 32-bit Linux, so > I'm betting you are actually using 64-bit Ubuntu Linux. > > See the answers to the question at > http://askubuntu.com/questions/41332/how-do-i-check-if-i-have-a-32-bit-or-a-64-bit-os > for techniques to determine whether you are using 32 or 64 bit Ubuntu. > > Assuming that you are using 64-bit Ubuntu as you should be, then you will > want the library available at > > http://packages.ubuntu.com/precise/amd64/libnetcdf6/download > > Note the amd64 instead of i386 in the URL. > > Once you have installed the 64-bit version of the library, if things still > aren't working, then please issue the following commands and send the > output: > > $ cd /usr/lib > $ ls -l libn* > > This is to check your placement and configuration of the libnetcdf* files. > > Tim > > On Thu, Mar 24, 2016, at 12:25, Dev vasu wrote: > > Dear Sir, > > While running the pipeline i am getting following error " > > "mris_make_surfaces: error while loading shared libraries: libnetcdf.so.6: > cannot open shared object file: No such file or directory " > > > I have seen that this question was asked before and you have suggested an > answer here > http://www.mail-archive.com/[email protected]/msg00782.html > > I have manually downloaded deb file of libnetcdf.so.6 > (http://packages.ubuntu.com/precise/i386/libnetcdf6/download) > and installed in the directory /usr/lib but it is still giving me the same > error. > > > > Thanks > > Vasudev > > > > > > -- > Timothy B. Brown > Business & Technology Application Analyst III > Pipeline Developer (Human Connectome Project) > tbbrown(at)wustl.edu > ________________________________________ > The material in this message is private and may contain Protected > Healthcare Information (PHI). > If you are not the intended recipient, be advised that any unauthorized > use, disclosure, copying > or the taking of any action in reliance on the contents of this > information is strictly prohibited. > If you have received this email in error, please immediately notify the > sender via telephone or > return mail. > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
