HI,
Cortical thickness maps on the surface mesh are already created for you.  You should analyze/view the thickness on the surface; not try to project the thickness back onto the volume.

cheers,
-MH

-- 
Michael Harms, Ph.D.
-----------------------------------------------------------
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO  63110 Email: [email protected]

From: <[email protected]> on behalf of Dev vasu <[email protected]>
Date: Friday, July 8, 2016 at 9:35 AM
To: "<[email protected]>" <[email protected]>
Subject: [HCP-Users] create cortical thickness maps for multiple subjects in the same template space

Dear Sir /madam,

I am able to successfully run Structural preprocessing pipeline on a group of 24 subjects, I would like to know how i can create cortical thickness maps for all the subjects in MNI152_T1_0.7mm.nii.gz template.



Thanks
Vasudev


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