Hi Vasudev, This question confuses me a bit, I confess, but I would use Freesurfer to generate cortical thickness measurements from T1w volumes:
https://surfer.nmr.mgh.harvard.edu/fswiki Donna On Jul 11, 2016, at 5:20 AM, Dev vasu <[email protected]> wrote: > Dear Sir, > > > can we used myelin style as a mapping method for Volume to surface mapping in > wb_command to produce cortical thickness files,Unfortunately i only have T1w > images and we have not acquired T2w images, i would like to use T1w images to > generate Cortical thickness , could you please let me know if its appropriate > way generate them using > wb_command -volume-to-surface-mapping command and Myelin style mapping method > ?. > > > > Thanks > Vasudev > > > > On 8 July 2016 at 17:03, Harms, Michael <[email protected]> wrote: > > Hi, > For statistical inference, I would recommend that you look into the PALM tool. > > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM > > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: Dev vasu <[email protected]> > Date: Friday, July 8, 2016 at 9:56 AM > To: "Harms, Michael" <[email protected]> > Cc: "<[email protected]>" <[email protected]> > Subject: Re: [HCP-Users] create cortical thickness maps for multiple subjects > in the same template space > > Dear Sir, > > Is there any way to quantify the changes in cortical thickness between > healthy controls and non healthy controls ?. > > > Thanks > Vasudev > > On 8 July 2016 at 16:47, Harms, Michael <[email protected]> wrote: > > HI, > Cortical thickness maps on the surface mesh are already created for you. You > should analyze/view the thickness on the surface; not try to project the > thickness back onto the volume. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: <[email protected]> on behalf of Dev vasu > <[email protected]> > Date: Friday, July 8, 2016 at 9:35 AM > To: "<[email protected]>" <[email protected]> > Subject: [HCP-Users] create cortical thickness maps for multiple subjects in > the same template space > > Dear Sir /madam, > > I am able to successfully run Structural preprocessing pipeline on a group of > 24 subjects, I would like to know how i can create cortical thickness maps > for all the subjects in MNI152_T1_0.7mm.nii.gz template. > > > > Thanks > Vasudev > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
