Re: [HCP-Users] create cortical thickness maps for multiple subjects in the same template space

[Harms, Michael]

Hi, For statistical inference, I would recommend that you look into the PALM tool. http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: Dev vasu <vasudevamurthy.devulapa...@gmail.com> Date: Friday, July 8, 2016 at 9:56 AM To: "Harms, Michael" <mha...@wustl.edu> Cc: "<hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] create cortical thickness maps for multiple subjects in the same template space Dear Sir, Is there any way to quantify the changes in cortical thickness between healthy controls and non healthy controls ?. Thanks Vasudev On 8 July 2016 at 16:47, Harms, Michael <mha...@wustl.edu> wrote: HI, Cortical thickness maps on the surface mesh are already created for you.  You should analyze/view the thickness on the surface; not try to project the thickness back onto the volume. cheers, -MH --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of Dev vasu <vasudevamurthy.devulapa...@gmail.com> Date: Friday, July 8, 2016 at 9:35 AM To: "<hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org> Subject: [HCP-Users] create cortical thickness maps for multiple subjects in the same template space Dear Sir /madam, I am able to successfully run Structural preprocessing pipeline on a group of 24 subjects, I would like to know how i can create cortical thickness maps for all the subjects in MNI152_T1_0.7mm.nii.gz template. Thanks Vasudev _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users