Re: [HCP-Users] Cluster Thresholding

[Harms, Michael]

And you can use PALM for a parcellated analysis as well.  That will in fact be an example during one of the “practical” sessions for the upcoming 2016 HCP Course in Boston! --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: "Glasser, Matthew" <glass...@wustl.edu> Date: Monday, July 25, 2016 at 11:17 PM To: "Harms, Michael" <mha...@wustl.edu>, "Michael F.W. Dreyfuss" <mid2...@med.cornell.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] Cluster Thresholding You might also consider a parcellated analysis if you are interested in affects at the areal level.   Peace, Matt. From: <hcp-users-boun...@humanconnectome.org> on behalf of "Harms, Michael" <mha...@wustl.edu> Date: Monday, July 25, 2016 at 10:08 PM To: "Michael F.W. Dreyfuss" <mid2...@med.cornell.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] Cluster Thresholding Yes, we recommend using PALM for statistical inference. --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of "Michael F.W. Dreyfuss" <mid2...@med.cornell.edu> Date: Monday, July 25, 2016 at 9:49 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] Cluster Thresholding Hi,  What is the most up-to-date method for thresholding clusters of adjacent grayordinates using workbench, or which fsl tools are best to use with cifti data. I saw that PALM by FSL was recommended in a previous thread. Is that still recommended? Is that to be used in place of film or FEAT or after on the regression output? Thank you, Michael MD-PhD Student Weill Cornell Medical College _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users