Hi Michael, PALM can be used either in place of FEAT at higher levels, or together it, using as inputs the COPEs from lower levels. As Michael Harms said earlier, this is exactly one of the practicals of the upcoming HCP course. The course materials will be available online for download shortly after, but if you can't wait a full month and would like to see a draft version, just send me an email off-list.
All the best, Anderson On 2 August 2016 at 16:43, Michael F.W. Dreyfuss <[email protected]> wrote: > Is PALM typically run on the output of FEAT or in it's place? Are there > any example scripts available using PALM on HCP-type data that could be > helpful for adapting to my data and analyses? > > > Thank you, > > Michael > ------------------------------ > *From:* Harms, Michael <[email protected]> > *Sent:* Tuesday, July 26, 2016 8:07:15 AM > *To:* Glasser, Matthew; Harms, Michael; Michael F.W. Dreyfuss; > [email protected] > > *Subject:* Re: [HCP-Users] Cluster Thresholding > > > And you can use PALM for a parcellated analysis as well. That will in > fact be an example during one of the “practical” sessions for the upcoming > 2016 HCP Course in Boston! > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: "Glasser, Matthew" <[email protected]> > Date: Monday, July 25, 2016 at 11:17 PM > To: "Harms, Michael" <[email protected]>, "Michael F.W. Dreyfuss" < > [email protected]>, "[email protected]" < > [email protected]> > Subject: Re: [HCP-Users] Cluster Thresholding > > You might also consider a parcellated analysis if you are interested in > affects at the areal level. > > Peace, > > Matt. > > From: <[email protected]> on behalf of "Harms, > Michael" <[email protected]> > Date: Monday, July 25, 2016 at 10:08 PM > To: "Michael F.W. Dreyfuss" <[email protected]>, " > [email protected]" <[email protected]> > Subject: Re: [HCP-Users] Cluster Thresholding > > > Yes, we recommend using PALM for statistical inference. > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: <[email protected]> on behalf of "Michael F.W. > Dreyfuss" <[email protected]> > Date: Monday, July 25, 2016 at 9:49 PM > To: "[email protected]" <[email protected]> > Subject: [HCP-Users] Cluster Thresholding > > Hi, > > What is the most up-to-date method for thresholding clusters of adjacent > grayordinates using workbench, or which fsl tools are best to use with > cifti data. I saw that PALM by FSL was recommended in a previous thread. Is > that still recommended? Is that to be used in place of film or FEAT or > after on the regression output? > > Thank you, > > Michael > MD-PhD Student > Weill Cornell Medical College > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > <https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.humanconnectome.org_mailman_listinfo_hcp-2Dusers&d=DQMGaQ&c=lb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s&r=rPclmYysc_z1plf99IoNsmxWf1JolkKMmL6bXnYFSwg&m=ct6GlLLhu67Te8o4rS3G_s6u0Idslp-csazL-w-JLyk&s=BNpWdqgGj0v-wWVfgQMoqzLGTV-OQdlz9ngUAEjItco&e=> > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. 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