Hello Magda, You can find the MMP 101 atlas in FSaverage space by following the link mentioned here. https://www.mail-archive.com/[email protected]/msg03096.html https://figshare.com/articles/HCP-MMP1_0_projected_on_MNI2009a_GM_volumetric_in_NIfTI_format/3501911
But, as mentioned in the paper and in the link above, this might not be ideal way to use this high resolution multi model parcellation. We would need to implement the machine learning areal classifier to our own data which is not released to the public yet. I was wondering when it would be released. Thanks, Pradeep On Thu, Aug 25, 2016 at 7:44 AM Magda Tsintou <[email protected]> wrote: > Thank you so much David. This may be a very silly question but is there > already a way to include that as an atlas in freesurfer or fsl to locate > those areas in every subject performing individualized parcellation in such > programs? If I recall correctly there is a plan to release the > individualized parcellations performed by HCP but I just think it will be a > nice implementation for the widely used programs so that researchers could > use that as an updated atlas for cortical parcellation. Thanks a lot anyway > for all your work! > > Best regards, > Magda. > > On Thu, Aug 25, 2016 at 9:32 AM, David Van Essen <[email protected]> > wrote: > >> Gonzalo et al., >> >> From a previous thread (see below), Matt commented on the multiple >> *.dlabel.nii hard parcellation files and recommended the 210V MPM version: >> >> HCP_PhaseTwo / Q1-Q6_RelatedValidation210 / MNINonLinear / >> fsaverage_LR32k / >> Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii >> >> David >> >> On Aug 11, 2016, at 3:32 PM, Glasser, Matthew <[email protected]> wrote: >> >> They are all similar and any would be valid, however I think people have >> preferred the 210V MPM in the thinking that it will be closest to the >> eventual 1100 subject MPM that we will release when it is ready: >> >> HCP_PhaseTwo / Q1-Q6_RelatedValidation210 / MNINonLinear / >> fsaverage_LR32k / >> Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii >> >> Matt. >> >> >> >> On Aug 25, 2016, at 7:52 AM, Gonzalo Rojas Costa < >> [email protected]> wrote: >> >> Hi: >> >> And, which files corresponds to the hard parcellation?... In the >> "files" button I found many files.. >> >> Sincerely, >> >> >> Gonzalo Rojas Costa >> Gonzalo Rojas Costa >> Laboratory for Advanced Medical Image Processing >> Department of Radiology >> Clínica las Condes >> Lo Fontecilla 441, Las Condes, Santiago, Chile. >> Tel: 56-2-2105170 >> Cel: 56-9-97771785 >> www.clc.cl >> https://scholar.google.com/citations?user=LO7LZ3oAAAAJ >> >> >> On Thu, Aug 25, 2016 at 9:29 AM, Glasser, Matthew <[email protected]> >> wrote: >> >> We haven’t released a specific toolbox but if your data are on cortical >> surfaces you can do these sort of comparisons with the publicly released >> data. We have released both a hard parcellation and probabilistic maps >> here: >> >> https://balsa.wustl.edu/study/show/RVVG >> >> Peace, >> >> Matt. >> >> From: <[email protected]> on behalf of Mareike Gann >> <[email protected]> >> Date: Thursday, August 25, 2016 at 2:51 AM >> To: "[email protected]" <[email protected]> >> Subject: [SPAM] [HCP-Users] 180 parcellation template/anatomy toolbox >> >> Hello, >> >> I am very interested in the 180 parcellation. Is there a way to use it as >> a >> template or anatomy toolbox to see with which parcellations my clusters >> overlap? >> >> Thanks for the help! >> >> Cheers, >> Mareike >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> >> ________________________________ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the >> contents >> of this information is strictly prohibited. If you have received this >> email >> in error, please immediately notify the sender via telephone or return >> mail. >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
