The parcellation was released primarily in CIFTI format. FSL has not released native support for CIFTI files, as far as I am aware. You can use workbench to get the equivalent left and right hemisphere GIFTI files by using "wb_command -cifti-separate <dlabel-file> COLUMN -label CORTEX_LEFT left.label.gii -label CORTEX_RIGHT right.label.gii". These files can be read by freesurfer, or matlab via the gifti toolbox.
Full help for the command is available through "wb_command -cifti-separate" or here: http://www.humanconnectome.org/software/workbench-command.php?function=-cifti-separate Tim On Fri, Aug 26, 2016 at 10:53 AM, Khadka, Sabin <[email protected]> wrote: > Hi Gonzalo- Are you trying to compare the freesurfer processed data using > the 180 parcellation using files as suggested? Just wondering if you had > any success and could share how you did it. I am not even able to read/load > the file using FSL. > > > > -Sabin > > > > *From:* [email protected] [mailto:hcp-users-bounces@ > humanconnectome.org] *On Behalf Of *David Van Essen > *Sent:* Thursday, August 25, 2016 10:33 AM > *To:* Gonzalo Rojas Costa; [email protected] > *Subject:* Re: [HCP-Users] [SPAM] 180 parcellation template/anatomy > toolbox > > > > Gonzalo et al., > > > > From a previous thread (see below), Matt commented on the multiple > *.dlabel.nii hard parcellation files and recommended the 210V MPM version: > > > > HCP_PhaseTwo / Q1-Q6_RelatedValidation210 / MNINonLinear / fsaverage_LR32k > / Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_ > Areas_Group_Colors.32k_fs_LR.dlabel.nii > > > > David > > > > On Aug 11, 2016, at 3:32 PM, Glasser, Matthew <[email protected]> wrote: > > > > They are all similar and any would be valid, however I think people have > preferred the 210V MPM in the thinking that it will be closest to the > eventual 1100 subject MPM that we will release when it is ready: > > > > HCP_PhaseTwo / Q1-Q6_RelatedValidation210 / MNINonLinear / fsaverage_LR32k > / Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_ > Areas_Group_Colors.32k_fs_LR.dlabel.nii > > > > Matt. > > > > > > On Aug 25, 2016, at 7:52 AM, Gonzalo Rojas Costa < > [email protected]> wrote: > > > > Hi: > > And, which files corresponds to the hard parcellation?... In the > "files" button I found many files.. > > Sincerely, > > > Gonzalo Rojas Costa > Gonzalo Rojas Costa > Laboratory for Advanced Medical Image Processing > Department of Radiology > Clínica las Condes > Lo Fontecilla 441, Las Condes, Santiago, Chile. > Tel: 56-2-2105170 > Cel: 56-9-97771785 > www.clc.cl > https://scholar.google.com/citations?user=LO7LZ3oAAAAJ > > > On Thu, Aug 25, 2016 at 9:29 AM, Glasser, Matthew <[email protected]> > wrote: > > We haven’t released a specific toolbox but if your data are on cortical > surfaces you can do these sort of comparisons with the publicly released > data. We have released both a hard parcellation and probabilistic maps > here: > > https://balsa.wustl.edu/study/show/RVVG > > Peace, > > Matt. > > From: <[email protected]> on behalf of Mareike Gann > <[email protected]> > Date: Thursday, August 25, 2016 at 2:51 AM > To: "[email protected]" <[email protected]> > Subject: [SPAM] [HCP-Users] 180 parcellation template/anatomy toolbox > > Hello, > > I am very interested in the 180 parcellation. Is there a way to use it as a > template or anatomy toolbox to see with which parcellations my clusters > overlap? > > Thanks for the help! > > Cheers, > Mareike > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > ________________________________ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. 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