Michael, if $ContrastName is a csv file, make sure its extension is csv. I’ve
gotten errors like that before when I named it .con.
> On Sep 14, 2016, at 11:29 AM, Michael F.W. Dreyfuss <mid2...@med.cornell.edu>
> wrote:
>
> Hello, I am trying to run palm on cifti data with TFCE to find mean
> activation across a group. When I use the -T flag, the program crashed with
> the error:
>
> Command:
> palm -i ${ContrastName}.dtseries.nii -transposedata -d
> $LevelThreeFEATDir/design.mat -o $ContrastName -t
> /tmp/CtxFGNG/CtxFGNG_Level3_Analysis/desion -T -ise
>
> Error:
> 0.01% [Design 1/1, Contrast 1/1, Shuffling 1/10000, Modality 1/1]
> Saving file: FoodNogo_dat_tstat
> Index exceeds matrix dimensions.
>
> Error in palm_tfce (line 77)
> elseif plm.Yisvtx(y) || plm.Yisfac(y),
>
> Error in palm_core (line 1680)
> Gtfce{y}{m}{c} =
> tfcefunc(G{y}{m}{c},y,opts,plm);
>
> Error in palm (line 81)
> palm_core(varargin{:});
>
>
> Alternatively, if I use the same command, but replace -T with -fdr, the
> program runs smoothly, so I do not think the problem is with my design files
> or data unless they need to be generated in a special way for TFCE using
> palm. Are there any recommendation or previous examples of how I can use TFCE
> on cifti data using palm?
>
> Any help on this is very appreciated.
>
> Thank you,
> Michael
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