Hello, I am trying to run palm on cifti data with TFCE to find mean activation across a group. When I use the -T flag, the program crashed with the error:
Command: palm -i ${ContrastName}.dtseries.nii -transposedata -d $LevelThreeFEATDir/design.mat -o $ContrastName -t /tmp/CtxFGNG/CtxFGNG_Level3_Analysis/desion -T -ise Error: 0.01% [Design 1/1, Contrast 1/1, Shuffling 1/10000, Modality 1/1] Saving file: FoodNogo_dat_tstat Index exceeds matrix dimensions. Error in palm_tfce (line 77) elseif plm.Yisvtx(y) || plm.Yisfac(y), Error in palm_core (line 1680) Gtfce{y}{m}{c} = tfcefunc(G{y}{m}{c},y,opts,plm); Error in palm (line 81) palm_core(varargin{:}); Alternatively, if I use the same command, but replace -T with -fdr, the program runs smoothly, so I do not think the problem is with my design files or data unless they need to be generated in a special way for TFCE using palm. Are there any recommendation or previous examples of how I can use TFCE on cifti data using palm? Any help on this is very appreciated. Thank you, Michael _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users