That's right. Matt.
From: <[email protected]<mailto:[email protected]>> on behalf of "Elam, Jennifer" <[email protected]<mailto:[email protected]>> Date: Monday, December 5, 2016 at 2:40 PM To: Nina de Lacy <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] MNI mask in minimally processed fMRI data Hi Nina, I believe the answer to your question is in Glasser et al. 2013<http://www.sciencedirect.com/science/article/pii/S1053811913005053> in the HCP pipelines: fMRIVolume section. If I'm reading it correctly, the brain mask is the final brain mask from the PostFreeSurfer pipeline for that subject. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> [email protected]<mailto:[email protected]> www.humanconnectome.org<http://www.humanconnectome.org/> ________________________________ From: [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> on behalf of Nina de Lacy <[email protected]<mailto:[email protected]>> Sent: Monday, December 5, 2016 2:06:53 PM To: [email protected]<mailto:[email protected]> Subject: [HCP-Users] MNI mask in minimally processed fMRI data Hi there: I am interested in using the minimally processed rest and task fMRI data. The details on the website mention: "One step spline resampling from the original EPI frames to atlas space including all transforms (motion, EPI distortion, EPI to T1w from FLIRT BBR, fine tuning of EPI to T1w with bbregister, nonlinear T1w to MNI)." (bold/italics added) Could I ask which specific MNI template/mask has been used? Thanks Nina de Lacy, MD This message and any attached files might contain confidential information protected by federal and state law. The information is intended only for the use of the individual(s) or entities originally named as addressees. The improper disclosure of such information may be subject to civil or criminal penalties. If this message reached you in error, please contact the sender and destroy this message. Disclosing, copying, forwardi! ng, or distributing the information by unauthorized individuals or entities is strictly prohibited by law. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
